Aniseed - Gene card

Gene Card

Best human hits

ZEB1; ZEB2; ZNF232

Species

P.fumigata

Unique Gene ID

Phfumi.g00008013

Gene Model ID

Phfumi.CG.MTP2014.S8161.g08013

Location

S8161:1159..8190

Transcript Models and Sequences

Phfumi.CG.MTP2014.S8161.g08013.01.t
Phfumi.CG.MTP2014.S8161.g08013.02.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Znf_C2H2_type	SMART	Zinc finger C2H2-type
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Znf_C2H2_type	Pfam	Zinc finger C2H2-type

GOSlim

27 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Blast	biological process
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
nucleic acid binding	Blast	molecular function
DNA binding	Blast	molecular function
chromatin binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
transcription coactivator activity	Blast	molecular function
transcription corepressor activity	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
nucleolus	Blast	cellular component
cytosol	Blast	cellular component
transcription factor binding	Blast	molecular function
zinc ion binding	Blast	molecular function
intracellular membrane-bounded organelle	Blast	cellular component
sequence-specific DNA binding	Blast	molecular function
metal ion binding	Blast	molecular function
intracellular non-membrane-bounded organelle	Blast	cellular component
nuclear lumen	Blast	cellular component
intracellular part	Blast	cellular component
macromolecular complex	Blast	cellular component
dephosphorylation	Blast	biological process
enzyme binding	Blast	molecular function
hydrolase activity	Blast	molecular function
enzyme regulator activity	Blast	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromatin	Hs	cellular component	172	3.18e-45
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	175	3.23e-46
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function	172	3.18e-45
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	175	3.23e-46
nucleic acid binding	Hs	molecular function	175	3.23e-46
DNA binding	Hs	molecular function	175	3.23e-46
chromatin binding	Hs	molecular function	175	3.23e-46
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	175	3.23e-46
transcription coactivator activity	Hs	molecular function	175	3.23e-46
transcription corepressor activity	Hs	molecular function	175	3.23e-46
protein binding	Hs	molecular function	175	3.23e-46
nucleus	Hs	cellular component	175	3.23e-46
nucleoplasm	Hs	cellular component	175	3.23e-46
transcription factor complex	Hs	cellular component	175	3.23e-46
nucleolus	Hs	cellular component	172	3.18e-45
cytosol	Hs	cellular component	175	3.23e-46
transcription factor binding	Hs	molecular function	175	3.23e-46
zinc ion binding	Hs	molecular function	175	3.23e-46
phosphatase regulator activity	Hs	molecular function	172	3.18e-45
intracellular membrane-bounded organelle	Hs	cellular component	104	1.02e-23
sequence-specific DNA binding	Hs	molecular function	172	3.18e-45
metal ion binding	Hs	molecular function	175	3.23e-46
R-SMAD binding	Hs	molecular function	172	3.18e-45
E-box binding	Hs	molecular function	175	3.23e-46

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	0.0015