Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

SRSF10; SRSF3; SRSF7

Species

P.fumigata

Unique Gene ID

Phfumi.g00002494

Gene Model ID

Phfumi.CG.MTP2014.S657.g02494

Location

S657:20391..21757

Transcript Models and Sequences

  Phfumi.CG.MTP2014.S657.g02494.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom SMART RNA recognition motif domain
RRM_dom Pfam RNA recognition motif domain
RRM_dom ProSiteProfiles RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily

GOSlim

22 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Blast cellular component
mRNA processing Orthology biological process
zinc ion binding Blast molecular function
RNA splicing Orthology biological process
nuclear speck Orthology cellular component
metal ion binding Blast molecular function
unfolded protein binding Blast molecular function
extracellular exosome Blast cellular component
transcription from RNA polymerase II promoter Orthology biological process
organic substance transport Orthology biological process
intracellular transport Orthology biological process
intracellular protein transport Orthology biological process
gene expression Orthology biological process
enzyme binding Orthology molecular function
regulation of gene expression Orthology biological process

GO (Orthology)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
termination of RNA polymerase II transcription Hs biological process
mRNA processing Hs biological process
RNA export from nucleus Hs biological process
mRNA export from nucleus Hs biological process
RNA splicing Hs biological process
nuclear speck Hs cellular component
mRNA 3'-end processing Hs biological process
phospholipase binding Hs molecular function
regulation of mRNA splicing, via spliceosome Hs biological process
mRNA transport Hs biological process
sequence-specific mRNA binding Hs molecular function

GO (Blast)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 139 1.27e-42
RNA binding Hs molecular function 139 1.27e-42
protein binding Hs molecular function 139 1.27e-42
nucleus Hs cellular component 139 1.27e-42
nucleoplasm Hs cellular component 139 1.27e-42
cytoplasm Hs cellular component 139 1.27e-42
cytosol Hs cellular component 68.2 2.16e-14
zinc ion binding Hs molecular function 124 7.10e-36
nuclear speck Hs cellular component 139 1.27e-42
protein domain specific binding Hs molecular function 124 7.10e-36
phospholipase binding Hs molecular function 139 1.27e-42
metal ion binding Hs molecular function 124 7.10e-36
RS domain binding Hs molecular function 68.2 2.16e-14
unfolded protein binding Hs molecular function 68.2 2.16e-14
extracellular exosome Hs cellular component 124 7.10e-36
sequence-specific mRNA binding Hs molecular function 139 1.27e-42

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 2.01E-24

Back to Top