Aniseed - Gene card

Gene Card

Best human hits

TBX2; TBX3; TBX5

Species

P.fumigata

Unique Gene ID

Phfumi.g00006450

Gene Model ID

Phfumi.CG.MTP2014.S4584.g06450

Location

S4584:3737..7933

Transcript Models and Sequences

Phfumi.CG.MTP2014.S4584.g06450.01.t
Phfumi.CG.MTP2014.S4584.g06450.02.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
TF_T-box_CS	ProSitePatterns	Transcription factor, T-box, conserved site
TF_T-box	Pfam	Transcription factor, T-box
TF_T-box	SMART	Transcription factor, T-box
TF_T-box	CDD	Transcription factor, T-box
p53-like_TF_DNA-bd	SUPERFAMILY	p53-like transcription factor, DNA-binding
TF_T-box	ProSiteProfiles	Transcription factor, T-box
TF_T-box	PANTHER	Transcription factor, T-box
TF_Brachyury	PRINTS	Transcription factor, Brachyury
TF_T-box	PRINTS	Transcription factor, T-box
T-box_sf	Gene3D	T-box superfamily

GOSlim

15 results

GO Term	Annotation Origin	Type
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
transcription factor binding	Blast	molecular function
macromolecular complex	Blast	cellular component
sequence-specific DNA binding	Blast	molecular function
intracellular part	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	229	1.24e-69
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	257	1.56e-78
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	257	1.56e-78
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	257	1.56e-78
RNA polymerase II transcription factor binding	Hs	molecular function	245	8.17e-74
RNA polymerase II activating transcription factor binding	Hs	molecular function	245	8.17e-74
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	229	1.24e-69
DNA binding	Hs	molecular function	257	1.56e-78
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	257	1.56e-78
protein binding	Hs	molecular function	257	1.56e-78
nucleus	Hs	cellular component	257	1.56e-78
nucleoplasm	Hs	cellular component	229	1.24e-69
transcription factor complex	Hs	cellular component	257	1.56e-78
cytoplasm	Hs	cellular component	229	1.24e-69
transcription factor binding	Hs	molecular function	229	1.24e-69
macromolecular complex	Hs	cellular component	229	1.24e-69
protein-DNA complex	Hs	cellular component	229	1.24e-69
sequence-specific DNA binding	Hs	molecular function	257	1.56e-78

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	PANTHER	molecular function	9.8E-127
nucleus	PANTHER	cellular component	9.8E-127
regulation of transcription, DNA-templated	PANTHER	biological process	9.8E-127