Aniseed - Gene card

Gene Card

Best human hits

MTF2; PHF1; PHF19

Species

P.fumigata

Unique Gene ID

Phfumi.g00005985

Gene Model ID

Phfumi.CG.MTP2014.S3835.g05985

Location

S3835:0..5857

Transcript Models and Sequences

Phfumi.CG.MTP2014.S3835.g05985.01.t
Phfumi.CG.MTP2014.S3835.g05985.02.t
Phfumi.CG.MTP2014.S3835.g05985.03.t
Phfumi.CG.MTP2014.S3835.g05985.04.t
Phfumi.CG.MTP2014.S3835.g05985.05.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Zinc_finger_PHD-type_CS	ProSitePatterns	Zinc finger, PHD-type, conserved site
Znf_FYVE_PHD	SUPERFAMILY	Zinc finger, FYVE/PHD-type
Znf_RING/FYVE/PHD	Gene3D	Zinc finger, RING/FYVE/PHD-type
Znf_PHD-finger	Pfam	Zinc finger, PHD-finger
Znf_PHD	SMART	Zinc finger, PHD-type
Znf_PHD-finger	ProSiteProfiles	Zinc finger, PHD-finger
Tudor	SMART	Tudor domain

GOSlim

29 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
chromatin binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
centrosome	Orthology	cellular component
microtubule organizing center	Orthology	cellular component
cytoskeleton	Orthology	cellular component
focal adhesion	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
metal ion binding	Orthology	molecular function
organelle organization	Orthology	biological process
multicellular organism development	Orthology	biological process
developmental process	Orthology	biological process
regulation of cellular metabolic process	Orthology	biological process
cellular protein modification process	Orthology	biological process
nucleoplasm part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
negative regulation of gene expression	Orthology	biological process
cell differentiation	Orthology	biological process

GO (Orthology)

28 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
DNA binding	Hs	molecular function
chromatin binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
centrosome	Hs	cellular component
microtubule organizing center	Hs	cellular component
cytoskeleton	Hs	cellular component
focal adhesion	Hs	cellular component
chromatin organization	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
segment specification	Hs	biological process
stem cell population maintenance	Hs	biological process
regulation of histone methylation	Hs	biological process
methylated histone binding	Hs	molecular function
ESC/E(Z) complex	Hs	cellular component
site of double-strand break	Hs	cellular component
negative regulation of gene expression, epigenetic	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
metal ion binding	Hs	molecular function
stem cell differentiation	Hs	biological process
negative regulation of histone H3-K27 methylation	Hs	biological process

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	383	4.99e-125
DNA binding	Hs	molecular function	383	4.99e-125
chromatin binding	Hs	molecular function	306	1.00e-95
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	306	1.00e-95
protein binding	Hs	molecular function	335	1.72e-106
nucleus	Hs	cellular component	383	4.99e-125
nucleoplasm	Hs	cellular component	383	4.99e-125
cytoplasm	Hs	cellular component	383	4.99e-125
centrosome	Hs	cellular component	306	1.00e-95
microtubule organizing center	Hs	cellular component	306	1.00e-95
cytoskeleton	Hs	cellular component	306	1.00e-95
focal adhesion	Hs	cellular component	383	4.99e-125
methylated histone binding	Hs	molecular function	383	4.99e-125
ESC/E(Z) complex	Hs	cellular component	383	4.99e-125
site of double-strand break	Hs	cellular component	306	1.00e-95
metal ion binding	Hs	molecular function	383	4.99e-125

GO (InterProScan)

No result

GO Term	Analysis	Type	e-value