Login
Help

GENE CARD

Submit your Data

  1. Gene 'Phfumi.CG.MTP2014.S2...'

Gene Card

Best human hits

AC008764.1; MED26; TCEA1

Species

P.fumigata

Unique Gene ID

Phfumi.g00005072

Gene Model ID

Phfumi.CG.MTP2014.S2665.g05072

Location

S2665:13132..15317

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
TFIIS_N Pfam Transcription factor IIS, N-terminal
TFIIS/LEDGF_dom_sf SUPERFAMILY TFIIS/LEDGF domain superfamily
TFIIS/LEDGF_dom_sf Gene3D TFIIS/LEDGF domain superfamily
TFIIS_N ProSiteProfiles Transcription factor IIS, N-terminal
TFIIS/CRSP70_N_sub SMART Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type

GOSlim

13 results

GO Term Annotation Origin Type
nucleic acid binding Blast molecular function
DNA binding Blast molecular function
transcription coactivator activity Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
zinc ion binding Blast molecular function
metal ion binding Blast molecular function
RNA binding Blast molecular function
regulation of gene expression Blast biological process
nucleoplasm part Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II transcription cofactor activity Hs molecular function 89.0 1.67e-20
nucleic acid binding Hs molecular function 55.1 4.25e-09
DNA binding Hs molecular function 55.1 4.25e-09
transcription coactivator activity Hs molecular function 89.0 1.67e-20
translation elongation factor activity Hs molecular function 55.1 4.25e-09
protein binding Hs molecular function 89.0 1.67e-20
nucleus Hs cellular component 89.0 1.67e-20
nucleoplasm Hs cellular component 89.0 1.67e-20
transcription factor TFIID complex Hs cellular component 55.1 4.25e-09
nucleolus Hs cellular component 55.1 4.25e-09
zinc ion binding Hs molecular function 55.1 4.25e-09
mediator complex Hs cellular component 89.0 1.67e-20
metal ion binding Hs molecular function 55.1 4.25e-09

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleus Pfam cellular component 4.1E-10