Aniseed - Gene card

External Database Gene Card

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WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

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Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
RRM_dom	ProSiteProfiles	RNA recognition motif domain
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
HnRNP-L/PTB	TIGRFAM	HnRNP-L/PTB
RRM_dom	SMART	RNA recognition motif domain
DUF3355	Pfam	Domain of unknown function DUF3355

GOSlim

26 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
RNA processing	Orthology	biological process
mRNA processing	Orthology	biological process
membrane	Orthology	cellular component
RNA metabolic process	Orthology	biological process
transcription regulatory region DNA binding	Orthology	molecular function
perinuclear region of cytoplasm	Orthology	cellular component
extracellular exosome	Orthology	cellular component
catalytic activity	Orthology	molecular function
metabolic process	Orthology	biological process
regulation of gene expression	Orthology	biological process
RNA splicing	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
cell communication	Orthology	biological process
cellular response to stress	Orthology	biological process
intracellular non-membrane-bounded organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component
negative regulation of gene expression	Orthology	biological process
response to organic substance	Orthology	biological process

GO (Orthology)

31 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
regulation of alternative mRNA splicing, via spliceosome	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
RNA processing	Hs	biological process
mRNA processing	Hs	biological process
circadian rhythm	Hs	biological process
membrane	Hs	cellular component
RNA metabolic process	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
positive regulation of RNA splicing	Hs	biological process
cellular response to amino acid starvation	Hs	biological process
ribonucleoprotein granule	Hs	cellular component
transcription regulatory region DNA binding	Hs	molecular function
pronucleus	Hs	cellular component
positive regulation of translation	Hs	biological process
negative regulation of mRNA splicing, via spliceosome	Hs	biological process
perinuclear region of cytoplasm	Hs	cellular component
extracellular exosome	Hs	cellular component
pre-mRNA intronic binding	Hs	molecular function
response to peptide	Hs	biological process
mRNA CDS binding	Hs	molecular function
catalytic activity	Hs	molecular function
metabolic process	Hs	biological process

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	383	1.13e-128
RNA binding	Hs	molecular function	383	1.13e-128
mRNA binding	Hs	molecular function	323	1.06e-105
mRNA 3'-UTR binding	Hs	molecular function	383	1.13e-128
protein binding	Hs	molecular function	383	1.13e-128
nucleus	Hs	cellular component	383	1.13e-128
nucleoplasm	Hs	cellular component	383	1.13e-128
cytoplasm	Hs	cellular component	383	1.13e-128
cytosol	Hs	cellular component	383	1.13e-128
membrane	Hs	cellular component	383	1.13e-128
intracellular ribonucleoprotein complex	Hs	cellular component	383	1.13e-128
ribonucleoprotein granule	Hs	cellular component	383	1.13e-128
transcription regulatory region DNA binding	Hs	molecular function	383	1.13e-128
pronucleus	Hs	cellular component	383	1.13e-128
perinuclear region of cytoplasm	Hs	cellular component	383	1.13e-128
extracellular exosome	Hs	cellular component	383	1.13e-128
pre-mRNA intronic binding	Hs	molecular function	383	1.13e-128
mRNA CDS binding	Hs	molecular function	383	1.13e-128

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	1.63E-16
RNA binding	TIGRFAM	molecular function	1.5E-118
nucleus	TIGRFAM	cellular component	1.5E-118
mRNA processing	TIGRFAM	biological process	1.5E-118

Gene Card

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