Aniseed - Gene card

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
RNaseH-like_sf	SUPERFAMILY	Ribonuclease H-like superfamily
R3H_dom_sf	SUPERFAMILY	R3H domain superfamily
RNase_CAF1	Pfam	Ribonuclease CAF1
RNaseH_sf	Gene3D	Ribonuclease H superfamily
R3H_dom	ProSiteProfiles	R3H domain

GOSlim

23 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Blast	cellular component
endoplasmic reticulum membrane	Blast	cellular component
cytosol	Orthology	cellular component
mRNA catabolic process	Orthology	biological process
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
hydrolase activity	Orthology	molecular function
protein kinase binding	Orthology	molecular function
cation binding	Orthology	molecular function
metal ion binding	Orthology	molecular function
nuclear-transcribed mRNA catabolic process	Orthology	biological process
RNA metabolic process	Orthology	biological process
gamete generation	Orthology	biological process
organelle organization	Orthology	biological process
DNA metabolic process	Orthology	biological process
transferase activity, transferring phosphorus-containing groups	Orthology	molecular function

GO (Orthology)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
nuclear-transcribed mRNA poly(A) tail shortening	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
nuclease activity	Hs	molecular function
exonuclease activity	Hs	molecular function
poly(A)-specific ribonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
mRNA catabolic process	Hs	biological process
female gamete generation	Hs	biological process
RNA modification	Hs	biological process
hydrolase activity	Hs	molecular function
protein kinase binding	Hs	molecular function
positive regulation of telomere maintenance via telomerase	Hs	biological process
cation binding	Hs	molecular function
regulation of mRNA stability	Hs	biological process
metal ion binding	Hs	molecular function
telomerase RNA binding	Hs	molecular function
RNA phosphodiester bond hydrolysis, exonucleolytic	Hs	biological process

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	290	1.52e-90
RNA binding	Hs	molecular function	290	1.52e-90
mRNA 3'-UTR binding	Hs	molecular function	290	1.52e-90
nuclease activity	Hs	molecular function	290	1.52e-90
exonuclease activity	Hs	molecular function	290	1.52e-90
poly(A)-specific ribonuclease activity	Hs	molecular function	290	1.52e-90
protein binding	Hs	molecular function	290	1.52e-90
nucleus	Hs	cellular component	290	1.52e-90
nucleolus	Hs	cellular component	290	1.52e-90
cytoplasm	Hs	cellular component	290	1.52e-90
endoplasmic reticulum	Hs	cellular component	124	3.36e-30
endoplasmic reticulum membrane	Hs	cellular component	124	3.36e-30
cytosol	Hs	cellular component	290	1.52e-90
membrane	Hs	cellular component	124	3.36e-30
integral component of membrane	Hs	cellular component	124	3.36e-30
hydrolase activity	Hs	molecular function	290	1.52e-90
protein kinase binding	Hs	molecular function	290	1.52e-90
cation binding	Hs	molecular function	290	1.52e-90
metal ion binding	Hs	molecular function	290	1.52e-90
telomerase RNA binding	Hs	molecular function	290	1.52e-90

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	Gene3D	molecular function	2.3E-52

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location