Aniseed - Gene card

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
WH_DNA-bd_sf	SUPERFAMILY	Winged helix DNA-binding domain superfamily
WH-like_DNA-bd_sf	Gene3D	Winged helix-like DNA-binding domain superfamily
Fork_head_dom	ProSiteProfiles	Fork head domain
Fork_head_dom	CDD	Fork head domain
TF_fork_head_CS_2	ProSitePatterns	Fork head domain conserved site 2
TF_fork_head_CS_1	ProSitePatterns	Fork head domain conserved site1
Fork_head_dom	SMART	Fork head domain
Fork_head_dom	Pfam	Fork head domain
Fork_head_dom	PRINTS	Fork head domain

GOSlim

29 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
multicellular organism development	Orthology	biological process
transcription factor binding	Blast	molecular function
anatomical structure morphogenesis	Orthology	biological process
cell junction	Blast	cellular component
cell differentiation	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
transcription regulatory region DNA binding	Blast	molecular function
system development	Orthology	biological process
anatomical structure formation involved in morphogenesis	Orthology	biological process
axonogenesis	Orthology	biological process
cell communication	Orthology	biological process
nervous system process	Orthology	biological process
animal organ development	Orthology	biological process
central nervous system development	Orthology	biological process
brain development	Orthology	biological process
cell migration	Orthology	biological process
nervous system development	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process

GO (Orthology)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
urogenital system development	Hs	biological process
somitogenesis	Hs	biological process
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
axon target recognition	Hs	biological process
visual learning	Hs	biological process
anatomical structure morphogenesis	Hs	biological process
spinal cord development	Hs	biological process
thalamus development	Hs	biological process
hypothalamus cell migration	Hs	biological process
telencephalon cell migration	Hs	biological process
cell differentiation	Hs	biological process
midbrain development	Hs	biological process
floor plate development	Hs	biological process
negative regulation of neuron apoptotic process	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
inferior colliculus development	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	180	3.90e-51
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	221	4.97e-68
DNA binding	Hs	molecular function	221	4.97e-68
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	221	4.97e-68
protein binding	Hs	molecular function	221	4.97e-68
nucleus	Hs	cellular component	221	4.97e-68
nucleoplasm	Hs	cellular component	180	3.90e-51
cytoplasm	Hs	cellular component	180	3.90e-51
transcription factor binding	Hs	molecular function	180	3.90e-51
protein domain specific binding	Hs	molecular function	180	3.90e-51
cell junction	Hs	cellular component	180	3.90e-51
sequence-specific DNA binding	Hs	molecular function	221	4.97e-68
transcription regulatory region DNA binding	Hs	molecular function	180	3.90e-51

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	SMART	molecular function	5.7E-59
regulation of transcription, DNA-templated	SMART	biological process	5.7E-59
sequence-specific DNA binding	SMART	molecular function	5.7E-59

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location