Login
Help

GENE CARD

Submit your Data

  1. > 

Gene Card

Best human hits

SOX14; SOX2; SOX21

Species

P.fumigata

Unique Gene ID

Phfumi.g00009631

Gene Model ID

Phfumi.CG.MTP2014.S18645.g09631

Location

S18645:1624..3027

Transcript Models and Sequences

  Phfumi.CG.MTP2014.S18645.g09631.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
HMG_box_dom SMART High mobility group box domain
HMG_box_dom_sf SUPERFAMILY High mobility group box domain superfamily
HMG_box_dom Pfam High mobility group box domain
HMG_box_dom ProSiteProfiles High mobility group box domain
HMG_box_dom_sf Gene3D High mobility group box domain superfamily

GOSlim

32 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
nervous system development Orthology biological process
visual perception Orthology biological process
sequence-specific DNA binding Orthology molecular function
transcription regulatory region DNA binding Blast molecular function
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
protein heterodimerization activity Orthology molecular function
animal organ development Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
cell differentiation Orthology biological process
cell migration Orthology biological process
cell development Orthology biological process
generation of neurons Orthology biological process
intracellular part Blast cellular component
RNA binding Blast molecular function

GO (Orthology)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
nervous system development Hs biological process
visual perception Hs biological process
entrainment of circadian clock Hs biological process
sequence-specific DNA binding Hs molecular function
skin development Hs biological process
nuclear transcription factor complex Hs cellular component
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
protein heterodimerization activity Hs molecular function
stem cell differentiation Hs biological process
regulation of neuron migration Hs biological process

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription regulatory region sequence-specific DNA binding Hs molecular function 169 5.06e-51
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 175 5.39e-54
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 175 5.39e-54
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 175 5.39e-54
DNA binding Hs molecular function 175 5.39e-54
chromatin binding Hs molecular function 174 5.57e-54
transcription factor activity, sequence-specific DNA binding Hs molecular function 175 5.39e-54
protein binding Hs molecular function 174 5.57e-54
nucleus Hs cellular component 175 5.39e-54
nucleoplasm Hs cellular component 169 5.06e-51
transcription factor complex Hs cellular component 169 5.06e-51
cytoplasm Hs cellular component 169 5.06e-51
cytosol Hs cellular component 169 5.06e-51
miRNA binding Hs molecular function 169 5.06e-51
sequence-specific DNA binding Hs molecular function 174 5.57e-54
transcription regulatory region DNA binding Hs molecular function 169 5.06e-51
nuclear transcription factor complex Hs cellular component 174 5.57e-54
protein heterodimerization activity Hs molecular function 174 5.57e-54

GO (InterProScan)

No result

GO Term Analysis Type e-value

Back to Top