Aniseed - Gene card

Gene Card

Best human hits

YTHDF1; YTHDF2; YTHDF3

Species

P.fumigata

Unique Gene ID

Phfumi.g00008812

Gene Model ID

Phfumi.CG.MTP2014.S11549.g08812

Location

S11549:391..2579

Transcript Models and Sequences

Phfumi.CG.MTP2014.S11549.g08812.01.t
Phfumi.CG.MTP2014.S11549.g08812.02.t
Phfumi.CG.MTP2014.S11549.g08812.03.t
Phfumi.CG.MTP2014.S11549.g08812.04.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
YTH_domain	Pfam	YTH domain
YTH_domain	ProSiteProfiles	YTH domain

GOSlim

23 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
microtubule organizing center	Orthology	cellular component
cytosol	Orthology	cellular component
cell differentiation	Orthology	biological process
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cell development	Orthology	biological process
gamete generation	Orthology	biological process
immune response	Orthology	biological process
macromolecular complex binding	Orthology	molecular function
mRNA catabolic process	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
negative regulation of signal transduction	Orthology	biological process
Notch signaling pathway	Orthology	biological process
translational initiation	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
multicellular organism development	Orthology	biological process
immune system process	Orthology	biological process
animal organ development	Orthology	biological process

GO (Orthology)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
P-body	Hs	cellular component
oocyte maturation	Hs	biological process
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
microtubule organizing center	Hs	cellular component
cytosol	Hs	cellular component
humoral immune response	Hs	biological process
cell differentiation	Hs	biological process
cytoplasmic ribonucleoprotein granule	Hs	cellular component
ribosome binding	Hs	molecular function
regulation of mRNA stability	Hs	biological process
positive regulation of translation	Hs	biological process
negative regulation of Notch signaling pathway	Hs	biological process
positive regulation of translational initiation	Hs	biological process
oogenesis	Hs	biological process
embryonic morphogenesis	Hs	biological process
mRNA destabilization	Hs	biological process
regulation of hematopoietic stem cell differentiation	Hs	biological process
regulation of meiotic cell cycle process involved in oocyte maturation	Hs	biological process
positive regulation of cap-independent translational initiation	Hs	biological process
N6-methyladenosine-containing RNA binding	Hs	molecular function

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
P-body	Hs	cellular component	429	4.42e-144
RNA binding	Hs	molecular function	429	4.42e-144
protein binding	Hs	molecular function	429	4.42e-144
nucleus	Hs	cellular component	429	4.42e-144
cytoplasm	Hs	cellular component	429	4.42e-144
microtubule organizing center	Hs	cellular component	429	4.42e-144
cytosol	Hs	cellular component	429	4.42e-144
cytoplasmic ribonucleoprotein granule	Hs	cellular component	429	4.42e-144
ribosome binding	Hs	molecular function	403	2.25e-134
N6-methyladenosine-containing RNA binding	Hs	molecular function	429	4.42e-144

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
RNA binding	Pfam	molecular function	1.5E-41