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GENE CARD

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  1. Gene 'NCBI:KH.778751'

Gene Card

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00015944

Gene Model ID

NCBI:KH.778751

Location

KhL20:372005..380958

Transcript Models and Sequences

  NCBI:KH.XM_018815772.1

External Database Gene Card

External database links

No result

Collections

Gene collection 1 (N. Satoh)

1 result

ciad011h15

Plate: R1CiGC02k13

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

15 results

IPR Term Analysis Definition
bHLH_dom CDD Myc-type, basic helix-loop-helix (bHLH) domain
PAS ProSiteProfiles PAS domain
PAS-like_dom_sf SUPERFAMILY PAS domain superfamily
HLH_DNA-bd_sf Gene3D Helix-loop-helix DNA-binding domain superfamily
PAS CDD PAS domain
bHLH_dom SMART Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom Pfam Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain
PAC SMART PAC motif
PAS_fold_3 Pfam PAS fold-3
Nuc_translocat PRINTS Nuclear translocator
PAS_fold Pfam PAS fold
PAS TIGRFAM PAS domain
PAS SMART PAS domain
HLH_DNA-bd_sf SUPERFAMILY Helix-loop-helix DNA-binding domain superfamily

GOSlim

21 results

GO Term Annotation Origin Type
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm InterProScan cellular component
regulation of transcription, DNA-templated Orthology biological process
protein dimerization activity Orthology molecular function
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
nucleoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
nervous system development Orthology biological process
nuclear body Orthology cellular component
cell differentiation Orthology biological process
negative regulation of transcription, DNA-templated Orthology biological process
protein heterodimerization activity Orthology molecular function
animal organ development Orthology biological process
intracellular part InterProScan cellular component
macromolecular complex InterProScan cellular component

GO (Orthology)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
regulation of transcription, DNA-templated Hs biological process
protein dimerization activity Hs molecular function
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
ureteric bud development Hs biological process
DNA binding Hs molecular function
nucleoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
multicellular organism development Hs biological process
nervous system development Hs biological process
embryonic pattern specification Hs biological process
nuclear body Hs cellular component
cell differentiation Hs biological process
lung development Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
protein heterodimerization activity Hs molecular function

GO (Blast)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value

GO (InterProScan)

7 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding PRINTS molecular function 5.2E-5
protein binding Pfam molecular function 4.2E-20
nucleus PRINTS cellular component 5.2E-5
transcription factor complex PRINTS cellular component 5.2E-5
cytoplasm PRINTS cellular component 5.2E-5
regulation of transcription, DNA-templated Pfam biological process 1.4E-8
protein dimerization activity CDD molecular function 1.15378E-10

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