Aniseed - Gene card

Gene 'NCBI:KH.108950876'

Gene Card

Best human hits

PRDM1; ZNF285; ZNF683

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00016194

Gene Model ID

NCBI:KH.108950876

Location

KhS600:3765..6274

Transcript Models and Sequences

NCBI:KH.XM_018817092.1

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
Znf_C2H2_type	SMART	Zinc finger C2H2-type
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily

GOSlim

16 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
nucleic acid binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
intracellular	Blast	cellular component
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
transferase activity	Blast	molecular function
sequence-specific DNA binding	Blast	molecular function
metal ion binding	Blast	molecular function
metabolic process	Blast	biological process
enzyme binding	Blast	molecular function
chromatin binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	188	1.34e-52
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	188	1.34e-52
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	188	1.34e-52
nucleic acid binding	Hs	molecular function	188	1.34e-52
DNA binding	Hs	molecular function	188	1.34e-52
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	188	1.34e-52
protein binding	Hs	molecular function	188	1.34e-52
intracellular	Hs	cellular component	105	1.28e-24
nucleus	Hs	cellular component	188	1.34e-52
nucleoplasm	Hs	cellular component	188	1.34e-52
cytoplasm	Hs	cellular component	188	1.34e-52
methyltransferase activity	Hs	molecular function	188	1.34e-52
transferase activity	Hs	molecular function	188	1.34e-52
histone deacetylase binding	Hs	molecular function	188	1.34e-52
sequence-specific DNA binding	Hs	molecular function	188	1.34e-52
metal ion binding	Hs	molecular function	188	1.34e-52
promoter-specific chromatin binding	Hs	molecular function	188	1.34e-52

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	2.5E-4