Aniseed - Gene card

Gene 'Moocul.CG.ELv1_2.S93...'

Gene Card

Best human hits

POLR2I; POLR3K; ZNRD1

Species

M.oculata

Unique Gene ID

Moocul.g00007580

Gene Model ID

Moocul.CG.ELv1_2.S93555.g07580

Location

S93555:65156..66531

Transcript Models and Sequences

Moocul.CG.ELv1_2.S93555.g07580.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
Zn_ribbon_RPB9_C	CDD	Pol II subunit B9, C-terminal zinc ribbon
Rpa12/Rpb9/Rpc10/TFS	PIRSF	DNA-directed RNA polymerase subunit/transcription factor S
DNA-dir_RNA_pol-M_15_CS	ProSitePatterns	DNA-directed RNA polymerase M, 15kDa subunit, conserved site
Znf_TFIIS	Pfam	Zinc finger, TFIIS-type
Znf_TFIIS	ProSiteProfiles	Zinc finger, TFIIS-type
Znf_TFIIS	SMART	Zinc finger, TFIIS-type
DNA-dir_RNA_pol_M/15kDasu	SMART	DNA-directed RNA polymerase, M/15kDa subunit
DNA-dir_RNA_pol_M/15kDasu	Pfam	DNA-directed RNA polymerase, M/15kDa subunit

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
mRNA splicing, via spliceosome	Hs	biological process
maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter	Hs	biological process
nucleic acid binding	Hs	molecular function
DNA-directed 5'-3' RNA polymerase activity	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
DNA-directed RNA polymerase II, core complex	Hs	cellular component
nucleolus	Hs	cellular component
transcription-coupled nucleotide-excision repair	Hs	biological process
transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
transcription initiation from RNA polymerase II promoter	Hs	biological process
transcription elongation from RNA polymerase II promoter	Hs	biological process
7-methylguanosine mRNA capping	Hs	biological process
mRNA cleavage	Hs	biological process
zinc ion binding	Hs	molecular function
fibroblast growth factor receptor signaling pathway	Hs	biological process
RNA metabolic process	Hs	biological process
somatic stem cell population maintenance	Hs	biological process
snRNA transcription from RNA polymerase II promoter	Hs	biological process
metal ion binding	Hs	molecular function
regulation of gene silencing by miRNA	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase I activity	Hs	molecular function	35.8	0.002
RNA polymerase III activity	Hs	molecular function	53.9	2.05e-10
nucleic acid binding	Hs	molecular function	204	1.29e-69
DNA-directed 5'-3' RNA polymerase activity	Hs	molecular function	204	1.29e-69
nucleus	Hs	cellular component	204	1.29e-69
nucleoplasm	Hs	cellular component	204	1.29e-69
DNA-directed RNA polymerase II, core complex	Hs	cellular component	204	1.29e-69
DNA-directed RNA polymerase III complex	Hs	cellular component	53.9	2.05e-10
nucleolus	Hs	cellular component	204	1.29e-69
DNA-directed RNA polymerase I complex	Hs	cellular component	35.8	0.002
cytosol	Hs	cellular component	53.9	2.05e-10
zinc ion binding	Hs	molecular function	204	1.29e-69
metal ion binding	Hs	molecular function	204	1.29e-69

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	2.3E-11
transcription, DNA-templated	SMART	biological process	1.3E-21
mRNA cleavage	CDD	biological process	1.23187E-25
zinc ion binding	Pfam	molecular function	2.3E-11