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GENE CARD

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Gene Card

Best human hits

DDX1; DDX17; DDX43

Species

M.oculata

Unique Gene ID

Moocul.g00007072

Gene Model ID

Moocul.CG.ELv1_2.S89651.g07072

Location

S89651:406..7977

Transcript Models and Sequences

  Moocul.CG.ELv1_2.S89651.g07072.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_C Pfam Helicase, C-terminal
SPRY_dom SMART SPRY domain
Helicase_C CDD Helicase, C-terminal
ConA-like_dom_sf SUPERFAMILY Concanavalin A-like lectin/glucanase domain superfamily
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
SPRY_dom Pfam SPRY domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_C SMART Helicase, C-terminal
B30.2/SPRY ProSiteProfiles B30.2/SPRY domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

42 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
spliceosomal complex assembly Hs biological process
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription cofactor activity Hs molecular function
RNA binding Hs molecular function
RNA helicase activity Hs molecular function
double-stranded RNA binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
nuclease activity Hs molecular function
exonuclease activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
double-strand break repair Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
tRNA splicing, via endonucleolytic cleavage and ligation Hs biological process
mRNA processing Hs biological process
regulation of translational initiation Hs biological process
multicellular organism development Hs biological process
ATP-dependent helicase activity Hs molecular function
tRNA processing Hs biological process
poly(A) binding Hs molecular function
response to virus Hs biological process
cytoplasmic stress granule Hs cellular component
RNA secondary structure unwinding Hs biological process
membrane Hs cellular component
hydrolase activity Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
DNA duplex unwinding Hs biological process
DNA/RNA helicase activity Hs molecular function
response to exogenous dsRNA Hs biological process
cleavage body Hs cellular component
tRNA-splicing ligase complex Hs cellular component
nucleic acid phosphodiester bond hydrolysis Hs biological process

GO (Blast)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 929 0.0
nucleic acid binding Hs molecular function 929 0.0
DNA binding Hs molecular function 929 0.0
chromatin binding Hs molecular function 929 0.0
transcription cofactor activity Hs molecular function 929 0.0
transcription coactivator activity Hs molecular function 146 2.46e-36
RNA binding Hs molecular function 929 0.0
RNA helicase activity Hs molecular function 929 0.0
double-stranded RNA binding Hs molecular function 929 0.0
ATP-dependent RNA helicase activity Hs molecular function 929 0.0
helicase activity Hs molecular function 929 0.0
nuclease activity Hs molecular function 929 0.0
exonuclease activity Hs molecular function 929 0.0
protein binding Hs molecular function 929 0.0
ATP binding Hs molecular function 929 0.0
intracellular Hs cellular component 140 1.04e-34
nucleus Hs cellular component 929 0.0
nucleoplasm Hs cellular component 929 0.0
nucleolus Hs cellular component 929 0.0
cytoplasm Hs cellular component 929 0.0
cytosol Hs cellular component 929 0.0
ATP-dependent helicase activity Hs molecular function 929 0.0
poly(A) binding Hs molecular function 929 0.0
RNA-dependent ATPase activity Hs molecular function 146 2.46e-36
cytoplasmic stress granule Hs cellular component 929 0.0
membrane Hs cellular component 929 0.0
nuclear speck Hs cellular component 146 2.46e-36
hydrolase activity Hs molecular function 929 0.0
intracellular ribonucleoprotein complex Hs cellular component 929 0.0
DNA/RNA helicase activity Hs molecular function 929 0.0
cleavage body Hs cellular component 929 0.0
tRNA-splicing ligase complex Hs cellular component 929 0.0

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 1.0E-64
protein binding SMART molecular function 1.5E-27
ATP binding Pfam molecular function 1.0E-64

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