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GENE CARD

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Gene Card

Best human hits

SHMT1; SHMT2

Species

M.oculata

Unique Gene ID

Moocul.g00003818

Gene Model ID

Moocul.CG.ELv1_2.S60721.g03818

Location

S60721:5105..6515

Transcript Models and Sequences

  Moocul.CG.ELv1_2.S60721.g03818.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
PyrdxlP-dep_Trfase_major Gene3D Pyridoxal phosphate-dependent transferase, major domain
Ser_HO-MeTrfase CDD Serine hydroxymethyltransferase
PyrdxlP-dep_Trfase_dom1 Gene3D Pyridoxal phosphate-dependent transferase domain 1
Ser_HO-MeTrfase_PLP_BS ProSitePatterns Serine hydroxymethyltransferase, pyridoxal phosphate binding site
PyrdxlP-dep_Trfase SUPERFAMILY Pyridoxal phosphate-dependent transferase
Ser_HO-MeTrfase PIRSF Serine hydroxymethyltransferase
Ser_HO-MeTrfase Hamap Serine hydroxymethyltransferase

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

33 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
translation repressor activity, nucleic acid binding Hs molecular function
catalytic activity Hs molecular function
glycine hydroxymethyltransferase activity Hs molecular function
thiol-dependent ubiquitin-specific protease activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
mitochondrion Hs cellular component
cytosol Hs cellular component
dTMP biosynthetic process Hs biological process
glycine metabolic process Hs biological process
glycine biosynthetic process Hs biological process
L-serine metabolic process Hs biological process
one-carbon metabolic process Hs biological process
L-allo-threonine aldolase activity Hs molecular function
purine nucleobase biosynthetic process Hs biological process
protein deubiquitination Hs biological process
amino acid binding Hs molecular function
transferase activity Hs molecular function
negative regulation of translation Hs biological process
glycine biosynthetic process from serine Hs biological process
pyridoxal phosphate binding Hs molecular function
tetrahydrofolate interconversion Hs biological process
identical protein binding Hs molecular function
protein homodimerization activity Hs molecular function
carnitine biosynthetic process Hs biological process
tetrahydrofolate metabolic process Hs biological process
folic acid metabolic process Hs biological process
mRNA 5'-UTR binding Hs molecular function
protein tetramerization Hs biological process
protein homotetramerization Hs biological process
extracellular exosome Hs cellular component
serine binding Hs molecular function

GO (Blast)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
translation repressor activity, nucleic acid binding Hs molecular function 612 0.0
chromatin binding Hs molecular function 597 0.0
catalytic activity Hs molecular function 612 0.0
glycine hydroxymethyltransferase activity Hs molecular function 612 0.0
thiol-dependent ubiquitin-specific protease activity Hs molecular function 612 0.0
protein binding Hs molecular function 612 0.0
nucleus Hs cellular component 612 0.0
cytoplasm Hs cellular component 612 0.0
mitochondrion Hs cellular component 612 0.0
mitochondrial inner membrane Hs cellular component 597 0.0
mitochondrial intermembrane space Hs cellular component 597 0.0
mitochondrial matrix Hs cellular component 597 0.0
cytosol Hs cellular component 612 0.0
methyltransferase activity Hs molecular function 597 0.0
L-allo-threonine aldolase activity Hs molecular function 612 0.0
microtubule cytoskeleton Hs cellular component 597 0.0
membrane Hs cellular component 597 0.0
amino acid binding Hs molecular function 612 0.0
transferase activity Hs molecular function 612 0.0
pyridoxal phosphate binding Hs molecular function 612 0.0
mitochondrial nucleoid Hs cellular component 597 0.0
identical protein binding Hs molecular function 612 0.0
protein homodimerization activity Hs molecular function 612 0.0
mRNA 5'-UTR binding Hs molecular function 612 0.0
extracellular exosome Hs cellular component 612 0.0
BRISC complex Hs cellular component 597 0.0
serine binding Hs molecular function 612 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
catalytic activity Gene3D molecular function 2.3E-212
glycine hydroxymethyltransferase activity CDD molecular function 0.0
glycine biosynthetic process from serine CDD biological process 0.0
pyridoxal phosphate binding CDD molecular function 0.0
tetrahydrofolate interconversion CDD biological process 0.0

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