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GENE CARD

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Gene Card

Best human hits

HSPG2; LAMA1; LAMA2

Species

M.oculata

Unique Gene ID

Moocul.g00014075

Gene Model ID

Moocul.CG.ELv1_2.S118931.g14075

Location

S118931:2615..35643

Transcript Models and Sequences

  Moocul.CG.ELv1_2.S118931.g14075.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

21 results

IPR Term Analysis Definition
Laminin_EGF ProSiteProfiles Laminin EGF domain
LDrepeatLR_classA_rpt PRINTS Low-density lipoprotein (LDL) receptor class A repeat
LDL_receptor-like_sf SUPERFAMILY LDL receptor-like superfamily
Laminin_IV Pfam Laminin IV
LDrepeatLR_classA_rpt CDD Low-density lipoprotein (LDL) receptor class A repeat
Ig-like_fold Gene3D Immunoglobulin-like fold
Ig-like_dom_sf SUPERFAMILY Immunoglobulin-like domain superfamily
Ig_sub SMART Immunoglobulin subtype
LDLR_class-A_CS ProSitePatterns Low-density lipoprotein (LDL) receptor class A, conserved site
Laminin_EGF ProSitePatterns Laminin EGF domain
Ig_sub2 SMART Immunoglobulin subtype 2
LDrepeatLR_classA_rpt SMART Low-density lipoprotein (LDL) receptor class A repeat
LDrepeatLR_classA_rpt Pfam Low-density lipoprotein (LDL) receptor class A repeat
Laminin_EGF Pfam Laminin EGF domain
LDrepeatLR_classA_rpt ProSiteProfiles Low-density lipoprotein (LDL) receptor class A repeat
Ig-like_dom ProSiteProfiles Immunoglobulin-like domain
Laminin_IV SMART Laminin IV
Laminin_IV ProSiteProfiles Laminin IV
Ig_I-set Pfam Immunoglobulin I-set
EGF-like_dom SMART EGF-like domain
Laminin_EGF SMART Laminin EGF domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

30 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
retinoid metabolic process Hs biological process
angiogenesis Hs biological process
calcium ion binding Hs molecular function
protein binding Hs molecular function
extracellular region Hs cellular component
proteinaceous extracellular matrix Hs cellular component
basement membrane Hs cellular component
extracellular space Hs cellular component
Golgi lumen Hs cellular component
plasma membrane Hs cellular component
focal adhesion Hs cellular component
glycosaminoglycan biosynthetic process Hs biological process
glycosaminoglycan catabolic process Hs biological process
lipid metabolic process Hs biological process
receptor-mediated endocytosis Hs biological process
inflammatory response Hs biological process
brain development Hs biological process
protein C-terminus binding Hs molecular function
cell growth Hs biological process
negative regulation of angiogenesis Hs biological process
cell differentiation Hs biological process
extracellular matrix organization Hs biological process
glycosaminoglycan metabolic process Hs biological process
extracellular matrix Hs cellular component
lysosomal lumen Hs cellular component
metal ion binding Hs molecular function
low-density lipoprotein particle receptor binding Hs molecular function
extracellular exosome Hs cellular component
cardiovascular system development Hs biological process
plasma membrane protein complex Hs cellular component

GO (Blast)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
receptor binding Hs molecular function 289 2.26e-78
structural molecule activity Hs molecular function 289 2.68e-78
extracellular matrix structural constituent Hs molecular function 289 2.26e-78
calcium ion binding Hs molecular function 793 0.0
protein binding Hs molecular function 793 0.0
extracellular region Hs cellular component 793 0.0
proteinaceous extracellular matrix Hs cellular component 793 0.0
basement membrane Hs cellular component 793 0.0
basal lamina Hs cellular component 289 2.68e-78
laminin-1 complex Hs cellular component 289 2.26e-78
laminin-3 complex Hs cellular component 289 2.26e-78
extracellular space Hs cellular component 793 0.0
Golgi lumen Hs cellular component 793 0.0
plasma membrane Hs cellular component 793 0.0
focal adhesion Hs cellular component 793 0.0
protein C-terminus binding Hs molecular function 793 0.0
membrane Hs cellular component 289 2.26e-78
extracellular matrix Hs cellular component 793 0.0
sarcolemma Hs cellular component 289 2.68e-78
dendritic spine Hs cellular component 289 2.68e-78
lysosomal lumen Hs cellular component 793 0.0
metal ion binding Hs molecular function 793 0.0
low-density lipoprotein particle receptor binding Hs molecular function 793 0.0
extracellular exosome Hs cellular component 793 0.0
plasma membrane protein complex Hs cellular component 793 0.0

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding PRINTS molecular function 2.3E-19