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GENE CARD

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Gene Card

Best human hits

SHMT1; SHMT2

Species

M.oculata

Unique Gene ID

Moocul.g00011523

Gene Model ID

Moocul.CG.ELv1_2.S110138.g11523

Location

S110138:51193..52723

Transcript Models and Sequences

  Moocul.CG.ELv1_2.S110138.g11523.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
PyrdxlP-dep_Trfase SUPERFAMILY Pyridoxal phosphate-dependent transferase
Ser_HO-MeTrfase PIRSF Serine hydroxymethyltransferase
Ser_HO-MeTrfase Hamap Serine hydroxymethyltransferase
PyrdxlP-dep_Trfase_dom1 Gene3D Pyridoxal phosphate-dependent transferase domain 1
Ser_HO-MeTrfase CDD Serine hydroxymethyltransferase
PyrdxlP-dep_Trfase_major Gene3D Pyridoxal phosphate-dependent transferase, major domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
translation repressor activity, nucleic acid binding Hs molecular function 587 0.0
chromatin binding Hs molecular function 576 0.0
catalytic activity Hs molecular function 587 0.0
glycine hydroxymethyltransferase activity Hs molecular function 587 0.0
thiol-dependent ubiquitin-specific protease activity Hs molecular function 587 0.0
protein binding Hs molecular function 587 0.0
nucleus Hs cellular component 587 0.0
cytoplasm Hs cellular component 587 0.0
mitochondrion Hs cellular component 587 0.0
mitochondrial inner membrane Hs cellular component 576 0.0
mitochondrial intermembrane space Hs cellular component 576 0.0
mitochondrial matrix Hs cellular component 576 0.0
cytosol Hs cellular component 587 0.0
methyltransferase activity Hs molecular function 576 0.0
L-allo-threonine aldolase activity Hs molecular function 587 0.0
microtubule cytoskeleton Hs cellular component 576 0.0
membrane Hs cellular component 576 0.0
amino acid binding Hs molecular function 587 0.0
transferase activity Hs molecular function 587 0.0
pyridoxal phosphate binding Hs molecular function 587 0.0
mitochondrial nucleoid Hs cellular component 576 0.0
identical protein binding Hs molecular function 587 0.0
protein homodimerization activity Hs molecular function 587 0.0
mRNA 5'-UTR binding Hs molecular function 587 0.0
extracellular exosome Hs cellular component 587 0.0
BRISC complex Hs cellular component 576 0.0
serine binding Hs molecular function 587 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
catalytic activity Gene3D molecular function 8.4E-204
glycine hydroxymethyltransferase activity CDD molecular function 0.0
glycine biosynthetic process from serine CDD biological process 0.0
pyridoxal phosphate binding CDD molecular function 0.0
tetrahydrofolate interconversion CDD biological process 0.0