Aniseed - Gene card

Gene Card

Best human hits

RORA; RORB; RORC

Species

M.oculata

Unique Gene ID

Moocul.g00009672

Gene Model ID

Moocul.CG.ELv1_2.S103611.g09672

Location

S103611:8636..13609

Transcript Models and Sequences

Moocul.CG.ELv1_2.S103611.g09672.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
Nuclear_hrmn_rcpt	PRINTS	Nuclear hormone receptor
Znf_hrmn_rcpt	Pfam	Zinc finger, nuclear hormone receptor-type
Nucl_hrmn_rcpt_lig-bd	SMART	Nuclear hormone receptor, ligand-binding domain
ThyrH_rcpt	PRINTS	Thyroid hormone receptor
Nucl_hrmn_rcpt_lig-bd	Pfam	Nuclear hormone receptor, ligand-binding domain
NHR_like_dom_sf	SUPERFAMILY	Nuclear hormone receptor-like domain superfamily
Znf_hrmn_rcpt	PRINTS	Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt	ProSitePatterns	Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt	SMART	Zinc finger, nuclear hormone receptor-type
Znf_NHR/GATA	Gene3D	Zinc finger, NHR/GATA-type
Znf_hrmn_rcpt	ProSiteProfiles	Zinc finger, nuclear hormone receptor-type

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

67 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
core promoter sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
transcription corepressor binding	Hs	molecular function
transcription coactivator binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function
angiogenesis	Hs	biological process
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
steroid hormone receptor activity	Hs	molecular function
nuclear receptor activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
transcription initiation from RNA polymerase II promoter	Hs	biological process
xenobiotic metabolic process	Hs	biological process
nitric oxide biosynthetic process	Hs	biological process
multicellular organism development	Hs	biological process
visual perception	Hs	biological process
circadian rhythm	Hs	biological process
beta-catenin binding	Hs	molecular function
transcription factor binding	Hs	molecular function
oxysterol binding	Hs	molecular function
zinc ion binding	Hs	molecular function
regulation of smoothened signaling pathway	Hs	biological process
positive regulation of vascular endothelial growth factor production	Hs	biological process
regulation of glucose metabolic process	Hs	biological process
nuclear body	Hs	cellular component
cytokine-mediated signaling pathway	Hs	biological process
cerebellar Purkinje cell differentiation	Hs	biological process
intracellular receptor signaling pathway	Hs	biological process
circadian regulation of gene expression	Hs	biological process
amacrine cell differentiation	Hs	biological process
eye photoreceptor cell development	Hs	biological process
muscle cell differentiation	Hs	biological process
regulation of circadian rhythm	Hs	biological process
positive regulation of circadian rhythm	Hs	biological process
negative regulation of I-kappaB kinase/NF-kappaB signaling	Hs	biological process
steroid hormone mediated signaling pathway	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
negative regulation of osteoblast differentiation	Hs	biological process
negative regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
cGMP metabolic process	Hs	biological process
retinal rod cell development	Hs	biological process
retinal cone cell development	Hs	biological process
metal ion binding	Hs	molecular function
rhythmic process	Hs	biological process
negative regulation of inflammatory response	Hs	biological process
response to stimulus	Hs	biological process
retina development in camera-type eye	Hs	biological process
adipose tissue development	Hs	biological process
triglyceride homeostasis	Hs	biological process
cellular response to retinoic acid	Hs	biological process
cellular response to interleukin-1	Hs	biological process
cellular response to tumor necrosis factor	Hs	biological process
cellular response to hypoxia	Hs	biological process
T-helper 17 cell differentiation	Hs	biological process
transcription factor activity, direct ligand regulated sequence-specific DNA binding	Hs	molecular function

GO (Blast)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	329	9.00e-103
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	305	3.83e-94
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	329	9.00e-103
core promoter sequence-specific DNA binding	Hs	molecular function	329	9.00e-103
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	205	8.87e-58
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	305	3.83e-94
transcription corepressor binding	Hs	molecular function	329	9.00e-103
transcription coactivator binding	Hs	molecular function	329	9.00e-103
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	329	9.00e-103
DNA binding	Hs	molecular function	329	9.00e-103
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	329	9.00e-103
steroid hormone receptor activity	Hs	molecular function	329	9.00e-103
nuclear receptor activity	Hs	molecular function	329	9.00e-103
protein binding	Hs	molecular function	329	9.00e-103
nucleus	Hs	cellular component	329	9.00e-103
nucleoplasm	Hs	cellular component	329	9.00e-103
beta-catenin binding	Hs	molecular function	329	9.00e-103
transcription factor binding	Hs	molecular function	329	9.00e-103
oxysterol binding	Hs	molecular function	329	9.00e-103
zinc ion binding	Hs	molecular function	329	9.00e-103
nuclear body	Hs	cellular component	305	3.83e-94
sequence-specific DNA binding	Hs	molecular function	329	9.00e-103
metal ion binding	Hs	molecular function	329	9.00e-103
transcription factor activity, direct ligand regulated sequence-specific DNA binding	Hs	molecular function	329	9.00e-103

GO (InterProScan)

9 results

GO Term	Analysis	Type	e-value
DNA binding	PRINTS	molecular function	1.1E-18
transcription factor activity, sequence-specific DNA binding	SMART	molecular function	3.0E-39
steroid hormone receptor activity	PRINTS	molecular function	1.1E-18
nucleus	SMART	cellular component	3.0E-39
regulation of transcription, DNA-templated	SMART	biological process	3.0E-39
zinc ion binding	SMART	molecular function	3.0E-39
steroid hormone mediated signaling pathway	SMART	biological process	8.3E-26
sequence-specific DNA binding	SMART	molecular function	3.0E-39
thyroid hormone receptor activity	PRINTS	molecular function	2.3E-9