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GENE CARD

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Gene Card

Best human hits

HOXA4; HOXB4; HOXC4

Species

M.occulta

Unique Gene ID

Mooccu.g00014533

Gene Model ID

Mooccu.CG.ELv1_2.S339894.g14533

Location

S339894:5304..9110

Transcript Models and Sequences

  Mooccu.CG.ELv1_2.S339894.g14533.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Homeobox_dom CDD Homeobox domain
Homeobox_dom Pfam Homeobox domain
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_Antennapedia_CS ProSitePatterns Homeobox protein, antennapedia type, conserved site
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_metazoa PRINTS Homeobox domain, metazoa
Homeobox_dom SMART Homeobox domain
Homeobox_antennapedia PRINTS Homeobox protein, antennapedia type

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 154 6.26e-46
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 155 2.65e-46
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 154 6.26e-46
DNA binding Hs molecular function 155 2.65e-46
transcription factor activity, sequence-specific DNA binding Hs molecular function 155 2.65e-46
protein binding Hs molecular function 154 6.26e-46
nucleus Hs cellular component 155 2.65e-46
centrosome Hs cellular component 155 2.65e-46
nuclear body Hs cellular component 154 5.43e-45
sequence-specific DNA binding Hs molecular function 155 2.65e-46
HMG box domain binding Hs molecular function 154 6.26e-46

GO (InterProScan)

5 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 8.5E-28
transcription factor activity, sequence-specific DNA binding PRINTS molecular function 1.1E-5
nucleus PRINTS cellular component 1.1E-5
regulation of transcription, DNA-templated PRINTS biological process 1.1E-5
sequence-specific DNA binding ProSitePatterns molecular function