Aniseed - Gene card

Gene Card

Best human hits

COL1A1; COL1A2; COL24A1

Species

M.occidentalis

Unique Gene ID

Moocci.g00029327

Gene Model ID

Moocci.CG.ELv1_2.S644241.g29327

Location

S644241:69637..86138

Transcript Models and Sequences

Moocci.CG.ELv1_2.S644241.g29327.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Fib_collagen_C	ProDom	Fibrillar collagen, C-terminal
Fib_collagen_C	ProSiteProfiles	Fibrillar collagen, C-terminal
Collagen	Pfam	Collagen triple helix repeat
Fib_collagen_C	SMART	Fibrillar collagen, C-terminal
Fib_collagen_C	Pfam	Fibrillar collagen, C-terminal

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

111 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
skeletal system development	Hs	biological process
ossification	Hs	biological process
blood vessel development	Hs	biological process
osteoblast differentiation	Hs	biological process
intramembranous ossification	Hs	biological process
endochondral ossification	Hs	biological process
protease binding	Hs	molecular function
extracellular matrix structural constituent	Hs	molecular function
protein binding	Hs	molecular function
extracellular region	Hs	cellular component
proteinaceous extracellular matrix	Hs	cellular component
collagen trimer	Hs	cellular component
collagen type I trimer	Hs	cellular component
extracellular space	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum lumen	Hs	cellular component
Golgi apparatus	Hs	cellular component
transforming growth factor beta receptor signaling pathway	Hs	biological process
Rho protein signal transduction	Hs	biological process
response to nutrient	Hs	biological process
blood coagulation	Hs	biological process
visual perception	Hs	biological process
sensory perception of sound	Hs	biological process
regulation of blood pressure	Hs	biological process
response to mechanical stimulus	Hs	biological process
positive regulation of epithelial to mesenchymal transition	Hs	biological process
protein transport	Hs	biological process
cytokine-mediated signaling pathway	Hs	biological process
secretory granule	Hs	cellular component
platelet activation	Hs	biological process
extracellular matrix organization	Hs	biological process
collagen fibril organization	Hs	biological process
positive regulation of cell migration	Hs	biological process
collagen catabolic process	Hs	biological process
protein binding, bridging	Hs	molecular function
extracellular matrix	Hs	cellular component
response to nutrient levels	Hs	biological process
response to estradiol	Hs	biological process
collagen biosynthetic process	Hs	biological process
protein localization to nucleus	Hs	biological process
collagen-activated tyrosine kinase receptor signaling pathway	Hs	biological process
wound healing	Hs	biological process
odontogenesis	Hs	biological process
response to drug	Hs	biological process
response to hydrogen peroxide	Hs	biological process
identical protein binding	Hs	molecular function
response to peptide hormone	Hs	biological process
skin development	Hs	biological process
skin morphogenesis	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
SMAD binding	Hs	molecular function
metal ion binding	Hs	molecular function
platelet-derived growth factor binding	Hs	molecular function
response to steroid hormone	Hs	biological process
skeletal system morphogenesis	Hs	biological process
embryonic skeletal system development	Hs	biological process
regulation of immune response	Hs	biological process
leukocyte migration	Hs	biological process
response to cAMP	Hs	biological process
response to hyperoxia	Hs	biological process
face morphogenesis	Hs	biological process
cartilage development involved in endochondral bone morphogenesis	Hs	biological process
extracellular exosome	Hs	cellular component
cellular response to amino acid stimulus	Hs	biological process
cellular response to mechanical stimulus	Hs	biological process
cellular response to retinoic acid	Hs	biological process
cellular response to tumor necrosis factor	Hs	biological process
cellular response to epidermal growth factor stimulus	Hs	biological process
cellular response to transforming growth factor beta stimulus	Hs	biological process
positive regulation of canonical Wnt signaling pathway	Hs	biological process
cartilage condensation	Hs	biological process
tissue homeostasis	Hs	biological process
chondrocyte differentiation	Hs	biological process
heart morphogenesis	Hs	biological process
integrin binding	Hs	molecular function
collagen type II trimer	Hs	cellular component
collagen type III trimer	Hs	cellular component
collagen type V trimer	Hs	cellular component
basement membrane	Hs	cellular component
proteoglycan metabolic process	Hs	biological process
cell-matrix adhesion	Hs	biological process
integrin-mediated signaling pathway	Hs	biological process
central nervous system development	Hs	biological process
heart development	Hs	biological process
aging	Hs	biological process
response to radiation	Hs	biological process
regulation of gene expression	Hs	biological process
peptide cross-linking	Hs	biological process
cerebral cortex development	Hs	biological process
extracellular matrix structural constituent conferring tensile strength	Hs	molecular function
notochord development	Hs	biological process
response to cytokine	Hs	biological process
positive regulation of Rho protein signal transduction	Hs	biological process
limb morphogenesis	Hs	biological process
MHC class II protein binding	Hs	molecular function
inner ear morphogenesis	Hs	biological process
digestive tract development	Hs	biological process
eye morphogenesis	Hs	biological process
inner ear development	Hs	biological process
negative regulation of immune response	Hs	biological process
cartilage development	Hs	biological process
palate development	Hs	biological process
limb bud formation	Hs	biological process
embryonic skeletal joint morphogenesis	Hs	biological process
bone development	Hs	biological process
otic vesicle development	Hs	biological process
anterior head development	Hs	biological process
supramolecular fiber organization	Hs	biological process
negative regulation of neuron migration	Hs	biological process
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand	Hs	biological process

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protease binding	Hs	molecular function	589	0.0
extracellular matrix structural constituent	Hs	molecular function	589	0.0
protein binding	Hs	molecular function	589	0.0
extracellular region	Hs	cellular component	589	0.0
proteinaceous extracellular matrix	Hs	cellular component	589	0.0
collagen trimer	Hs	cellular component	589	0.0
collagen type I trimer	Hs	cellular component	589	0.0
extracellular space	Hs	cellular component	589	0.0
cytoplasm	Hs	cellular component	567	2.31e-178
endoplasmic reticulum	Hs	cellular component	589	0.0
endoplasmic reticulum lumen	Hs	cellular component	589	0.0
Golgi apparatus	Hs	cellular component	567	2.31e-178
secretory granule	Hs	cellular component	567	2.31e-178
protein binding, bridging	Hs	molecular function	589	0.0
extracellular matrix	Hs	cellular component	589	0.0
identical protein binding	Hs	molecular function	589	0.0
SMAD binding	Hs	molecular function	589	0.0
metal ion binding	Hs	molecular function	589	0.0
platelet-derived growth factor binding	Hs	molecular function	589	0.0
extracellular exosome	Hs	cellular component	589	0.0

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
extracellular matrix structural constituent	Pfam	molecular function	8.1E-65