Aniseed - Gene card

Gene Card

Best human hits

DDX27; DDX47; DDX49

Species

M.occidentalis

Unique Gene ID

Moocci.g00016122

Gene Model ID

Moocci.CG.ELv1_2.S471952.g16122

Location

S471952:13616..15950

Transcript Models and Sequences

Moocci.CG.ELv1_2.S471952.g16122.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
RNA_helicase_DEAD_Q_motif	ProSiteProfiles	RNA helicase, DEAD-box type, Q motif
Helicase_C	SMART	Helicase, C-terminal
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
Helicase_C	Pfam	Helicase, C-terminal
DEAD/DEAH_box_helicase_dom	Pfam	DEAD/DEAH box helicase domain
Helicase_ATP-bd	SMART	Helicase superfamily 1/2, ATP-binding domain
Helicase_C	CDD	Helicase, C-terminal
Helicase_C	ProSiteProfiles	Helicase, C-terminal
RNA-helicase_DEAD-box_CS	ProSitePatterns	ATP-dependent RNA helicase DEAD-box, conserved site
Helicase_ATP-bd	ProSiteProfiles	Helicase superfamily 1/2, ATP-binding domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
ATP-dependent RNA helicase activity	Hs	molecular function
helicase activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
chromosome	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
rRNA processing	Hs	biological process
RNA secondary structure unwinding	Hs	biological process
hydrolase activity	Hs	molecular function
ribosome biogenesis	Hs	biological process

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	712	0.0
nucleic acid binding	Hs	molecular function	712	0.0
RNA binding	Hs	molecular function	712	0.0
ATP-dependent RNA helicase activity	Hs	molecular function	712	0.0
helicase activity	Hs	molecular function	712	0.0
protein binding	Hs	molecular function	712	0.0
ATP binding	Hs	molecular function	712	0.0
nucleus	Hs	cellular component	712	0.0
nucleoplasm	Hs	cellular component	272	2.60e-83
chromosome	Hs	cellular component	712	0.0
nucleolus	Hs	cellular component	712	0.0
cytoplasm	Hs	cellular component	712	0.0
membrane	Hs	cellular component	272	2.60e-83
hydrolase activity	Hs	molecular function	712	0.0

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	7.3E-47
ATP binding	Pfam	molecular function	7.3E-47