Aniseed - Gene card

Gene Card

Best human hits

PABPC1; PABPC4; PABPC4L

Species

M.occidentalis

Unique Gene ID

Moocci.g00006998

Gene Model ID

Moocci.CG.ELv1_2.S284917.g06998

Location

S284917:3051..7076

Transcript Models and Sequences

Moocci.CG.ELv1_2.S284917.g06998.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
SF3B4_RRM1	CDD	SF3B4, RNA recognition motif 1
SF3B4_RRM2	CDD	SF3B4, RNA recognition motif 2
RRM_dom	ProSiteProfiles	RNA recognition motif domain
RRM_dom	Pfam	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	SMART	RNA recognition motif domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
mRNA splicing, via spliceosome	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
spliceosomal complex	Hs	cellular component
mRNA processing	Hs	biological process
RNA splicing	Hs	biological process
RNA splicing, via transesterification reactions	Hs	biological process
nucleoplasm	Hs	cellular component
U12-type spliceosomal complex	Hs	cellular component
positive regulation of mRNA splicing, via spliceosome	Hs	biological process

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	127	5.37e-33
RNA binding	Hs	molecular function	127	5.37e-33
mRNA binding	Hs	molecular function	127	5.37e-33
mRNA 3'-UTR binding	Hs	molecular function	123	1.48e-31
protein binding	Hs	molecular function	127	5.37e-33
nucleus	Hs	cellular component	127	5.37e-33
spliceosomal complex	Hs	cellular component	123	1.48e-31
cytoplasm	Hs	cellular component	127	5.37e-33
cytosol	Hs	cellular component	127	5.37e-33
focal adhesion	Hs	cellular component	123	1.48e-31
protein C-terminus binding	Hs	molecular function	123	1.48e-31
poly(A) binding	Hs	molecular function	127	5.37e-33
poly(U) RNA binding	Hs	molecular function	127	5.37e-33
translation activator activity	Hs	molecular function	123	1.48e-31
cytoplasmic stress granule	Hs	cellular component	127	5.37e-33
membrane	Hs	cellular component	123	1.48e-31
intracellular ribonucleoprotein complex	Hs	cellular component	127	5.37e-33
cytoplasmic ribonucleoprotein granule	Hs	cellular component	123	1.48e-31
extracellular exosome	Hs	cellular component	123	1.48e-31
catalytic step 2 spliceosome	Hs	cellular component	123	1.48e-31

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	4.12E-48