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GENE CARD

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Gene Card

Best human hits

NHP2; RPL7A; SNU13

Species

M.occidentalis

Unique Gene ID

Moocci.g00003855

Gene Model ID

Moocci.CG.ELv1_2.S190796.g03855

Location

S190796:54871..55255

Transcript Models and Sequences

  Moocci.CG.ELv1_2.S190796.g03855.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
H/ACA_rnp_Nhp2_euk PRINTS H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
Ribosomal_L7Ae/L8/Nhp2 PRINTS Ribosomal protein L7Ae/L8/Nhp2 family
L30e-like Gene3D 50S ribosomal protein L30e-like
L30e-like SUPERFAMILY 50S ribosomal protein L30e-like
Ribosomal_L7Ae_CS ProSitePatterns Ribosomal protein L7Ae conserved site
Ribosomal_L7Ae/L30e/S12e/Gad45 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

30 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
mRNA splicing, via spliceosome Hs biological process
maturation of LSU-rRNA Hs biological process
box C/D snoRNP assembly Hs biological process
dense fibrillar component Hs cellular component
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
U4atac snRNP Hs cellular component
nucleolus Hs cellular component
rRNA processing Hs biological process
mRNA processing Hs biological process
single fertilization Hs biological process
RNA splicing Hs biological process
maturation of SSU-rRNA Hs biological process
snoRNA binding Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
U4 snRNA binding Hs molecular function
U4atac snRNA binding Hs molecular function
box C/D snoRNP complex Hs cellular component
small-subunit processome Hs cellular component
macromolecular complex Hs cellular component
U3 snoRNA binding Hs molecular function
box C/D snoRNA binding Hs molecular function
ribosome biogenesis Hs biological process
U4/U6 x U5 tri-snRNP complex Hs cellular component
ATPase binding Hs molecular function
U2-type precatalytic spliceosome Hs cellular component
precatalytic spliceosome Hs cellular component

GO (Blast)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromosome, telomeric region Hs cellular component 95.5 4.00e-26
dense fibrillar component Hs cellular component 208 6.47e-71
RNA binding Hs molecular function 208 6.47e-71
structural constituent of ribosome Hs molecular function 50.4 2.51e-08
protein binding Hs molecular function 208 6.47e-71
nucleus Hs cellular component 208 6.47e-71
nucleoplasm Hs cellular component 208 6.47e-71
spliceosomal complex Hs cellular component 208 6.47e-71
U4atac snRNP Hs cellular component 208 6.47e-71
telomerase holoenzyme complex Hs cellular component 95.5 4.00e-26
nucleolus Hs cellular component 208 6.47e-71
small nucleolar ribonucleoprotein complex Hs cellular component 95.5 4.00e-26
cytoplasm Hs cellular component 50.4 2.51e-08
cytosol Hs cellular component 50.4 2.51e-08
ribosome Hs cellular component 50.4 2.51e-08
focal adhesion Hs cellular component 50.4 2.51e-08
Cajal body Hs cellular component 95.5 4.00e-26
membrane Hs cellular component 50.4 2.51e-08
cytosolic large ribosomal subunit Hs cellular component 50.4 2.51e-08
snoRNA binding Hs molecular function 208 6.47e-71
intracellular ribonucleoprotein complex Hs cellular component 208 6.47e-71
U4 snRNA binding Hs molecular function 208 6.47e-71
U4atac snRNA binding Hs molecular function 208 6.47e-71
box C/D snoRNP complex Hs cellular component 208 6.47e-71
box H/ACA snoRNP complex Hs cellular component 95.5 4.00e-26
small-subunit processome Hs cellular component 208 6.47e-71
macromolecular complex Hs cellular component 208 6.47e-71
U3 snoRNA binding Hs molecular function 208 6.47e-71
box C/D snoRNA binding Hs molecular function 208 6.47e-71
box H/ACA snoRNA binding Hs molecular function 95.5 4.00e-26
polysomal ribosome Hs cellular component 50.4 2.51e-08
cadherin binding Hs molecular function 50.4 2.51e-08
U4/U6 x U5 tri-snRNP complex Hs cellular component 208 6.47e-71
ATPase binding Hs molecular function 208 6.47e-71
telomerase RNA binding Hs molecular function 95.5 4.00e-26
extracellular exosome Hs cellular component 50.4 2.51e-08
U2-type precatalytic spliceosome Hs cellular component 208 6.47e-71
precatalytic spliceosome Hs cellular component 208 6.47e-71
box H/ACA scaRNP complex Hs cellular component 95.5 4.00e-26
box H/ACA telomerase RNP complex Hs cellular component 95.5 4.00e-26

GO (InterProScan)

4 results

GO Term Analysis Type e-value
RNA binding PRINTS molecular function 9.7E-27
nucleolus PRINTS cellular component 9.7E-27
intracellular ribonucleoprotein complex ProSitePatterns cellular component
ribosome biogenesis ProSitePatterns biological process

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