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GENE CARD

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  1. Gene 'KH2012:KH.S115.11'

Gene Card

Best human hits

TAF3; TAF8

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013631

Gene Model ID

KH2012:KH.S115.11

Location

KhS115:150823..153772

Transcript Models and Sequences

  KH2012:KH.S115.11.v1.A.SL2-1
KH2012:KH.S115.11.v2.A.ND1-1
KH2012:KH.S115.11.v2.A.nonSL10-1
KH2012:KH.S115.11.v2.A.nonSL11-1
KH2012:KH.S115.11.v2.A.nonSL3-1
KH2012:KH.S115.11.v2.A.nonSL4-1
KH2012:KH.S115.11.v2.A.nonSL5-1
KH2012:KH.S115.11.v2.A.nonSL6-1
KH2012:KH.S115.11.v2.A.nonSL7-1
KH2012:KH.S115.11.v2.A.nonSL8-1
KH2012:KH.S115.11.v2.A.nonSL9-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000015910
NCBI Reference Sequence XM_018816515.1
Collections

Gateway full ORF

1 result

cima814146

Plate: VES58_J15

Gene collection 1 (N. Satoh)

1 result

cicl002m05

Plate: R1CiGC08m02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Histone-fold SUPERFAMILY Histone-fold
TFIID_su8_C CDD Transcription factor TFIID, subunit 8, C-terminal
BTP SMART Bromodomain associated domain
BTP Pfam Bromodomain associated domain
Histone-fold Gene3D Histone-fold
TFIID_su8_C Pfam Transcription factor TFIID, subunit 8, C-terminal

GOSlim

18 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
cell differentiation Orthology biological process
nuclear membrane Blast cellular component
positive regulation of transcription, DNA-templated Orthology biological process
metal ion binding Blast molecular function
protein heterodimerization activity Orthology molecular function
perinuclear region of cytoplasm Orthology cellular component
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
cellular process Orthology biological process
protein localization to organelle Orthology biological process

GO (Orthology)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor TFIID complex Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
multicellular organism development Hs biological process
cell differentiation Hs biological process
snRNA transcription from RNA polymerase II promoter Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
protein heterodimerization activity Hs molecular function
perinuclear region of cytoplasm Hs cellular component
maintenance of protein location in nucleus Hs biological process

GO (Blast)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
p53 binding Hs molecular function 48.1 2.33e-06
protein binding Hs molecular function 205 4.51e-65
nucleus Hs cellular component 205 4.51e-65
nucleoplasm Hs cellular component 205 4.51e-65
transcription factor TFIID complex Hs cellular component 205 4.51e-65
cytoplasm Hs cellular component 205 4.51e-65
nuclear membrane Hs cellular component 48.1 2.33e-06
metal ion binding Hs molecular function 48.1 2.33e-06
protein heterodimerization activity Hs molecular function 205 4.51e-65
perinuclear region of cytoplasm Hs cellular component 205 4.51e-65

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein heterodimerization activity Gene3D molecular function 2.6E-25

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