Aniseed - Gene card

Gene Card

Best human hits

CACNA1C; HVCN1; TMEM266

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013195

Gene Model ID

KH2012:KH.L87.32

Location

KhL87:43772..47136

Transcript Models and Sequences

KH2012:KH.L87.32.v1.A.SL1-1
KH2012:KH.L87.32.v1.A.SL4-1
KH2012:KH.L87.32.v1.R.ND2-1
KH2012:KH.L87.32.v2.A.SL4-1
KH2012:KH.L87.32.v2.R.ND3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000014744
NCBI Reference Sequence	NM_001078469.1

Collections

Gene collection 1 (N. Satoh)

1 result

ciad027m12

Plate: R1CiGC03d09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Hvcn1	PANTHER	Voltage-gated hydrogen channel 1
Ion_trans_dom	Pfam	Ion transport domain
Volt_channel_dom_sf	Gene3D	Voltage-dependent channel domain superfamily

GOSlim

30 results

GO Term	Annotation Origin	Type
protein binding	Blast	molecular function
calmodulin binding	Blast	molecular function
cytoplasm	Blast	cellular component
cytosol	Blast	cellular component
plasma membrane	Blast	cellular component
integral component of plasma membrane	Blast	cellular component
ion transport	Blast	biological process
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
identical protein binding	Blast	molecular function
metal ion binding	Blast	molecular function
transmembrane transport	Blast	biological process
metal ion transport	Blast	biological process
plasma membrane part	Blast	cellular component
macromolecular complex	Blast	cellular component
organelle	Blast	cellular component
postsynapse	Blast	cellular component
neuron part	Blast	cellular component
cation transport	Blast	biological process
organelle part	Blast	cellular component
cytoplasmic part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
monovalent inorganic cation transport	Blast	biological process
intracellular organelle part	Blast	cellular component
whole membrane	Blast	cellular component
cytoplasmic vesicle	Blast	cellular component
endomembrane system	Blast	cellular component
bounding membrane of organelle	Blast	cellular component
cytoskeletal protein binding	Blast	molecular function
cell-cell signaling	Blast	biological process

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
ion channel activity	Hs	molecular function	120	9.59e-32
voltage-gated ion channel activity	Hs	molecular function	120	9.59e-32
voltage-gated calcium channel activity	Hs	molecular function	38.9	0.004
calcium channel activity	Hs	molecular function	38.9	0.004
protein binding	Hs	molecular function	38.9	0.004
calmodulin binding	Hs	molecular function	38.9	0.004
cytoplasm	Hs	cellular component	38.9	0.004
cytosol	Hs	cellular component	74.7	1.03e-14
plasma membrane	Hs	cellular component	120	9.59e-32
integral component of plasma membrane	Hs	cellular component	120	9.59e-32
voltage-gated calcium channel complex	Hs	cellular component	38.9	0.004
high voltage-gated calcium channel activity	Hs	molecular function	38.9	0.004
postsynaptic density	Hs	cellular component	38.9	0.004
membrane	Hs	cellular component	120	9.59e-32
integral component of membrane	Hs	cellular component	120	9.59e-32
voltage-gated cation channel activity	Hs	molecular function	120	9.59e-32
Z disc	Hs	cellular component	38.9	0.004
voltage-gated proton channel activity	Hs	molecular function	120	9.59e-32
secretory granule membrane	Hs	cellular component	120	9.59e-32
specific granule membrane	Hs	cellular component	120	9.59e-32
identical protein binding	Hs	molecular function	120	9.59e-32
metal ion binding	Hs	molecular function	38.9	0.004
alpha-actinin binding	Hs	molecular function	38.9	0.004
voltage-gated calcium channel activity involved in cardiac muscle cell action potential	Hs	molecular function	38.9	0.004
voltage-gated calcium channel activity involved in AV node cell action potential	Hs	molecular function	38.9	0.004
L-type voltage-gated calcium channel complex	Hs	cellular component	38.9	0.004

GO (InterProScan)

7 results

GO Term	Analysis	Type	e-value
ion channel activity	Pfam	molecular function	3.8E-6
integral component of plasma membrane	PANTHER	cellular component	2.3E-65
ion transport	Pfam	biological process	3.8E-6
membrane	Pfam	cellular component	3.8E-6
voltage-gated proton channel activity	PANTHER	molecular function	2.3E-65
transmembrane transport	Pfam	biological process	3.8E-6
hydrogen ion transmembrane transport	PANTHER	biological process	2.3E-65