Aniseed - Gene card

Gene Card

Best human hits

DNAJB11; DNAJC17; DNAJC5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012776

Gene Model ID

KH2012:KH.L53.4

Location

KhL53:74257..108112

Transcript Models and Sequences

KH2012:KH.L53.4.v1.A.ND1-1
KH2012:KH.L53.4.v1.A.nonSL3-1
KH2012:KH.L53.4.v1.A.nonSL4-1
KH2012:KH.L53.4.v1.A.nonSL6-1
KH2012:KH.L53.4.v1.A.SL2-1
KH2012:KH.L53.4.v2.A.ND1-1
KH2012:KH.L53.4.v2.A.nonSL3-1
KH2012:KH.L53.4.v2.A.nonSL4-1
KH2012:KH.L53.4.v2.A.nonSL6-1
KH2012:KH.L53.4.v2.A.SL2-1
KH2012:KH.L53.4.v3.A.SL5-1
KH2012:KH.L53.4.v4.A.SL5-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000005697
ENSEMBL	ENSCING00000019914
NCBI Reference Sequence	XM_009863420.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cieg062g12

Plate: R1CiGC39p02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
DnaJ_domain	Pfam	DnaJ domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
DnaJ_domain	CDD	DnaJ domain
DNAJC17_RRM	CDD	DNAJC17, RNA recognition motif
DnaJ_domain	PRINTS	DnaJ domain
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
DnaJ_domain	ProSiteProfiles	DnaJ domain
J_dom_sf	Gene3D	Chaperone J-domain superfamily
DnaJ_domain	SMART	DnaJ domain
J_dom_sf	SUPERFAMILY	Chaperone J-domain superfamily

GOSlim

26 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Blast	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Blast	cellular component
lysosomal membrane	Blast	cellular component
endoplasmic reticulum	Blast	cellular component
endoplasmic reticulum lumen	Blast	cellular component
plasma membrane	Blast	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
membrane	Blast	cellular component
melanosome	Blast	cellular component
unfolded protein binding	Blast	molecular function
extracellular exosome	Blast	cellular component
cytoplasmic vesicle	Blast	cellular component
synapse part	Blast	cellular component
endomembrane system	Blast	cellular component
neuron part	Blast	cellular component
whole membrane	Blast	cellular component
intracellular organelle part	Blast	cellular component
bounding membrane of organelle	Blast	cellular component
cell projection part	Blast	cellular component
axon	Blast	cellular component

GO (Orthology)

8 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
toxin transport	Hs	biological process

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	223	1.96e-71
RNA binding	Hs	molecular function	223	1.96e-71
protein binding	Hs	molecular function	68.6	7.00e-13
nucleus	Hs	cellular component	223	1.96e-71
cytoplasm	Hs	cellular component	223	1.96e-71
mitochondrion	Hs	cellular component	65.5	1.26e-12
lysosomal membrane	Hs	cellular component	65.5	1.26e-12
endoplasmic reticulum	Hs	cellular component	68.6	7.00e-13
endoplasmic reticulum lumen	Hs	cellular component	68.6	7.00e-13
plasma membrane	Hs	cellular component	65.5	1.26e-12
synaptic vesicle	Hs	cellular component	65.5	1.26e-12
membrane	Hs	cellular component	68.6	7.00e-13
azurophil granule membrane	Hs	cellular component	65.5	1.26e-12
specific granule membrane	Hs	cellular component	65.5	1.26e-12
melanosome	Hs	cellular component	65.5	1.26e-12
ATP-dependent protein binding	Hs	molecular function	65.5	1.26e-12
terminal bouton	Hs	cellular component	65.5	1.26e-12
unfolded protein binding	Hs	molecular function	68.6	7.00e-13
clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane	Hs	cellular component	65.5	1.26e-12
extracellular exosome	Hs	cellular component	65.5	1.26e-12

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	1.78E-7