Login
Help

GENE CARD

Submit your Data

  1. > 
  2. > 
  3. > 
  4. > 

Gene Card

Best human hits

SNX18; SNX30; SNX4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012079

Gene Model ID

KH2012:KH.L20.27

Location

KhL20:423309..426061

Transcript Models and Sequences

  KH2012:KH.L20.27.v1.A.ND2-1
KH2012:KH.L20.27.v2.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000004454
NCBI Reference Sequence XM_002119469.3
Collections

Gateway full ORF

2 results

cien92327

Plate: VES84_C19

cien96986

Plate: VES85_B13

Gene collection 1 (N. Satoh)

1 result

cicl043p04

Plate: R1CiGC12l22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
SNX4 PANTHER Sorting nexin-4
SNX4_BAR CDD Sorting nexin-4, BAR domain
PX_SNX4 CDD Sorting nexin 4, PX domain
Phox SMART Phox homologous domain
Phox ProSiteProfiles Phox homologous domain
Phox Pfam Phox homologous domain
PX_dom_sf Gene3D PX domain superfamily
AH/BAR_dom_sf Gene3D AH/BAR domain superfamily
PX_dom_sf SUPERFAMILY PX domain superfamily

GOSlim

28 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
cytoplasm Orthology cellular component
endosome Orthology cellular component
plasma membrane Orthology cellular component
endomembrane system Blast cellular component
protein transport Orthology biological process
membrane Orthology cellular component
cytoplasmic vesicle Blast cellular component
macromolecular complex Orthology cellular component
extracellular exosome Blast cellular component
receptor binding Orthology molecular function
macromolecular complex binding Orthology molecular function
cytoskeletal part Orthology cellular component
microtubule cytoskeleton Orthology cellular component
membrane organization Orthology biological process
organelle organization Orthology biological process
binding Orthology molecular function
membrane part Orthology cellular component
cytoplasmic part Orthology cellular component
whole membrane Orthology cellular component
intracellular organelle part Orthology cellular component
early endosome Orthology cellular component
bounding membrane of organelle Orthology cellular component
intracellular transport Orthology biological process
anion binding Orthology molecular function
organelle membrane Blast cellular component
intracellular part Blast cellular component
plasma membrane part Blast cellular component

GO (Orthology)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
epidermal growth factor receptor binding Hs molecular function
insulin receptor binding Hs molecular function
protein binding Hs molecular function
cytoplasm Hs cellular component
endosome Hs cellular component
cytoplasmic dynein complex Hs cellular component
plasma membrane Hs cellular component
endocytosis Hs biological process
lipid binding Hs molecular function
protein transport Hs biological process
membrane Hs cellular component
vesicle organization Hs biological process
extrinsic component of membrane Hs cellular component
SNARE complex Hs cellular component
early endosome membrane Hs cellular component
endocytic recycling Hs biological process
macromolecular complex Hs cellular component
phosphatidylinositol binding Hs molecular function
transferrin receptor binding Hs molecular function
leptin receptor binding Hs molecular function

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
epidermal growth factor receptor binding Hs molecular function 377 6.03e-128
insulin receptor binding Hs molecular function 377 6.03e-128
protein binding Hs molecular function 377 6.03e-128
phosphatidylinositol-4,5-bisphosphate binding Hs molecular function 68.2 3.41e-12
cytoplasm Hs cellular component 377 6.03e-128
endosome Hs cellular component 377 6.03e-128
cytoplasmic dynein complex Hs cellular component 377 6.03e-128
plasma membrane Hs cellular component 377 6.03e-128
lipid binding Hs molecular function 377 6.03e-128
endosome membrane Hs cellular component 68.2 3.41e-12
endomembrane system Hs cellular component 68.2 3.41e-12
membrane Hs cellular component 377 6.03e-128
extrinsic component of membrane Hs cellular component 377 6.03e-128
clathrin-coated vesicle Hs cellular component 68.2 3.41e-12
cytoplasmic vesicle membrane Hs cellular component 68.2 3.41e-12
SNARE complex Hs cellular component 377 6.03e-128
extrinsic component of cytoplasmic side of plasma membrane Hs cellular component 68.2 3.41e-12
cytoplasmic vesicle Hs cellular component 68.2 3.41e-12
early endosome membrane Hs cellular component 377 6.03e-128
macromolecular complex Hs cellular component 377 6.03e-128
phosphatidylinositol binding Hs molecular function 377 6.03e-128
extracellular exosome Hs cellular component 68.2 3.41e-12
transferrin receptor binding Hs molecular function 377 6.03e-128
leptin receptor binding Hs molecular function 377 6.03e-128

GO (InterProScan)

2 results

GO Term Analysis Type e-value
protein transport PANTHER biological process 1.1E-124
phosphatidylinositol binding Gene3D molecular function 2.5E-31

Back to Top