Aniseed - Gene card

Gene 'KH2012:KH.L18.71'

Gene Card

Best human hits

RPUSD1; RPUSD3; RPUSD4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012012

Gene Model ID

KH2012:KH.L18.71

Location

KhL18:506896..509933

Transcript Models and Sequences

KH2012:KH.L18.71.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000003759
NCBI Reference Sequence	XM_009863148.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg047j05

Plate: R1CiGC23o09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
PsdUridine_synth_RsuA/RluD	Pfam	Pseudouridine synthase, RsuA/RluB/C/D/E/F
PsdUridine_synth_RsuA/RluD	CDD	Pseudouridine synthase, RsuA/RluB/C/D/E/F
PsdUridine_synth_cat_dom_sf	SUPERFAMILY	Pseudouridine synthase, catalytic domain superfamily

GOSlim

8 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
mitochondrion	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
RNA metabolic process	Orthology	biological process
RNA processing	Orthology	biological process
catalytic activity	Orthology	molecular function
hydrolase activity	Orthology	molecular function

GO (Orthology)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
pseudouridine synthesis	Hs	biological process
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
tRNA processing	Hs	biological process
RNA modification	Hs	biological process
pseudouridine synthase activity	Hs	molecular function
isomerase activity	Hs	molecular function
deaminase activity	Hs	molecular function
tRNA pseudouridine synthesis	Hs	biological process

GO (Blast)

7 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	238	7.64e-74
protein binding	Hs	molecular function	238	7.64e-74
mitochondrion	Hs	cellular component	238	7.64e-74
mitochondrial matrix	Hs	cellular component	238	7.64e-74
pseudouridine synthase activity	Hs	molecular function	238	7.64e-74
isomerase activity	Hs	molecular function	238	7.64e-74
deaminase activity	Hs	molecular function	238	7.64e-74

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
pseudouridine synthesis	CDD	biological process	1.7168E-41
RNA binding	CDD	molecular function	1.7168E-41
RNA modification	CDD	biological process	1.7168E-41
pseudouridine synthase activity	CDD	molecular function	1.7168E-41