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GENE CARD

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  1. Gene 'KH2012:KH.L170.69'

Gene Card

Best human hits

ARHGAP15; SYDE1; SYDE2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011807

Gene Model ID

KH2012:KH.L170.69

Location

KhL170:635043..658199

Transcript Models and Sequences

  KH2012:KH.L170.69.v1.A.ND1-1
KH2012:KH.L170.69.v2.A.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000017321
ENSEMBL ENSCING00000019930
Collections

Gateway full ORF

2 results

cien99414

Plate: VES85_J20

cien134421

Plate: VES91_M09

Gene collection 1 (N. Satoh)

1 result

ciad019a17

Plate: R1CiGC03c15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
Rho_GTPase_activation_prot SUPERFAMILY Rho GTPase activation protein
RhoGAP_dom SMART Rho GTPase-activating protein domain
RhoGAP_dom Pfam Rho GTPase-activating protein domain
C2_domain_sf Gene3D C2 domain superfamily
Rho_GTPase_activation_prot Gene3D Rho GTPase activation protein
RhoGAP_dom ProSiteProfiles Rho GTPase-activating protein domain
PDZ Pfam PDZ domain
PDZ SMART PDZ domain
PDZ_sf SUPERFAMILY PDZ superfamily
PDZ ProSiteProfiles PDZ domain

GOSlim

13 results

GO Term Annotation Origin Type
GTPase activator activity Orthology molecular function
protein binding Blast molecular function
cytoplasm Orthology cellular component
cytosol Orthology cellular component
signal transduction Orthology biological process
membrane Blast cellular component
regulation of GTPase activity Orthology biological process
positive regulation of GTPase activity Orthology biological process
small GTPase mediated signal transduction Orthology biological process
regulation of signal transduction Orthology biological process
organelle organization Orthology biological process
cell migration Orthology biological process
multicellular organism development Orthology biological process

GO (Orthology)

9 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
GTPase activator activity Hs molecular function
cytoplasm Hs cellular component
cytosol Hs cellular component
signal transduction Hs biological process
regulation of GTPase activity Hs biological process
regulation of small GTPase mediated signal transduction Hs biological process
regulation of cytoskeleton organization Hs biological process
activation of GTPase activity Hs biological process
positive regulation of trophoblast cell migration Hs biological process

GO (Blast)

5 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
GTPase activator activity Hs molecular function 266 2.37e-73
protein binding Hs molecular function 110 4.14e-25
cytoplasm Hs cellular component 266 2.37e-73
cytosol Hs cellular component 266 2.37e-73
membrane Hs cellular component 110 4.14e-25

GO (InterProScan)

2 results

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 4.53E-11
signal transduction Gene3D biological process 3.0E-50

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