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GENE CARD

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Gene Card

Best human hits

ACTA2; ACTB; ACTG1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011571

Gene Model ID

KH2012:KH.L154.31

Location

KhL154:179696..183530

Transcript Models and Sequences

  KH2012:KH.L154.31.v1.A.SL4-1
KH2012:KH.L154.31.v1.R.ND1-1
KH2012:KH.L154.31.v2.A.nonSL2-2
KH2012:KH.L154.31.v3.A.ND3-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000008797
NCBI Reference Sequence XM_002128926.3
Collections

Gateway full ORF

2 results

cien61781

Plate: VES79_D23

cien119342

Plate: VES88_A23

Gene collection 1 (N. Satoh)

2 results

citb043b12

Plate: R1CiGC33o21

cicl056e09

Plate: R1CiGC14n21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
Actin Pfam Actin family
Actin SMART Actin family
Actin PANTHER Actin family
Actin_CS ProSitePatterns Actin, conserved site
Actin PRINTS Actin family
Histone_H3/CENP-A SMART Histone H3/CENP-A
Histone_H3/CENP-A PANTHER Histone H3/CENP-A
Histone_H3/CENP-A ProSitePatterns Histone H3/CENP-A
Histone-fold SUPERFAMILY Histone-fold
Histone_H2A/H2B/H3 Pfam Histone H2A/H2B/H3
Histone-fold Gene3D Histone-fold
Histone_H3/CENP-A PRINTS Histone H3/CENP-A

GOSlim

42 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
ATP binding Blast molecular function
extracellular space Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
focal adhesion Blast cellular component
membrane Blast cellular component
protein kinase binding Blast molecular function
lamellipodium Blast cellular component
ubiquitin protein ligase binding Blast molecular function
vesicle Blast cellular component
macromolecular complex Blast cellular component
identical protein binding Blast molecular function
myelin sheath Blast cellular component
cell body Blast cellular component
extracellular exosome Blast cellular component
DNA binding Blast molecular function
protein heterodimerization activity InterProScan molecular function
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
organelle organization Blast biological process
structural molecule activity Blast molecular function
cytoskeletal part Blast cellular component
cytoskeletal protein binding Blast molecular function
cytoplasmic part Blast cellular component
plasma membrane region Blast cellular component
cell projection Blast cellular component
organelle part Blast cellular component
transcription factor binding Blast molecular function
chromatin binding Blast molecular function
macromolecular complex binding Blast molecular function
nucleoplasm part Blast cellular component
cytoplasmic vesicle Blast cellular component
enzyme binding Blast molecular function
intracellular organelle part InterProScan cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

43 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 674 0.0
nuclear chromatin Hs cellular component 674 0.0
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 674 0.0
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 674 0.0
structural constituent of cytoskeleton Hs molecular function 674 0.0
protein binding Hs molecular function 674 0.0
profilin binding Hs molecular function 674 0.0
ATP binding Hs molecular function 674 0.0
extracellular space Hs cellular component 674 0.0
nucleus Hs cellular component 674 0.0
nucleoplasm Hs cellular component 674 0.0
cytoplasm Hs cellular component 674 0.0
cytosol Hs cellular component 674 0.0
cytoskeleton Hs cellular component 674 0.0
actin filament Hs cellular component 674 0.0
plasma membrane Hs cellular component 674 0.0
focal adhesion Hs cellular component 674 0.0
actin cytoskeleton Hs cellular component 674 0.0
membrane Hs cellular component 674 0.0
kinesin binding Hs molecular function 674 0.0
protein kinase binding Hs molecular function 674 0.0
myofibril Hs cellular component 674 0.0
lamellipodium Hs cellular component 657 0.0
filopodium Hs cellular component 657 0.0
smooth muscle contractile fiber Hs cellular component 657 0.0
intracellular ribonucleoprotein complex Hs cellular component 674 0.0
Tat protein binding Hs molecular function 674 0.0
nucleosomal DNA binding Hs molecular function 674 0.0
ubiquitin protein ligase binding Hs molecular function 674 0.0
filamentous actin Hs cellular component 674 0.0
vesicle Hs cellular component 674 0.0
macromolecular complex Hs cellular component 674 0.0
NuA4 histone acetyltransferase complex Hs cellular component 674 0.0
cytoplasmic ribonucleoprotein granule Hs cellular component 674 0.0
identical protein binding Hs molecular function 674 0.0
myelin sheath Hs cellular component 674 0.0
cell body Hs cellular component 657 0.0
phagocytic vesicle Hs cellular component 674 0.0
nitric-oxide synthase binding Hs molecular function 674 0.0
extracellular exosome Hs cellular component 674 0.0
blood microparticle Hs cellular component 674 0.0
dense body Hs cellular component 674 0.0
structural constituent of postsynaptic actin cytoskeleton Hs molecular function 674 0.0

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleosome PANTHER cellular component 1.5E-95
DNA binding PANTHER molecular function 1.5E-95
protein heterodimerization activity Gene3D molecular function 8.7E-80

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