Aniseed - Gene card

Gene Card

Best human hits

RPS21; TBCE

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011291

Gene Model ID

KH2012:KH.L147.12

Location

KhL147:309290..311083

Transcript Models and Sequences

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000003630

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl045j12

Plate: R1CiGC13k13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Ribosomal_S21e	Pfam	Ribosomal protein S21e
Ribosomal_S21e	ProDom	Ribosomal protein S21e
Ribosomal_S21e_CS	ProSitePatterns	Ribosomal protein S21e, conserved site
Ribosomal_S21e	PANTHER	Ribosomal protein S21e
Ribosomal_S21e	PIRSF	Ribosomal protein S21e
Ribosomal_S21e_sf	Gene3D	Ribosomal protein S21e superfamily

GOSlim

17 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
cytoskeleton	Blast	cellular component
microtubule	Blast	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
protein N-terminus binding	Orthology	molecular function
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component

GO (Orthology)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Hs	biological process
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Hs	biological process
cytoplasmic translation	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
rough endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
small ribosomal subunit	Hs	cellular component
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
polysomal ribosome	Hs	cellular component
protein N-terminus binding	Hs	molecular function

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	88.2	7.78e-25
structural constituent of ribosome	Hs	molecular function	88.2	7.78e-25
protein binding	Hs	molecular function	88.2	7.78e-25
intracellular	Hs	cellular component	88.2	7.78e-25
nucleoplasm	Hs	cellular component	88.2	7.78e-25
cytoplasm	Hs	cellular component	88.2	7.78e-25
endoplasmic reticulum	Hs	cellular component	88.2	7.78e-25
rough endoplasmic reticulum	Hs	cellular component	88.2	7.78e-25
cytosol	Hs	cellular component	88.2	7.78e-25
ribosome	Hs	cellular component	88.2	7.78e-25
cytoskeleton	Hs	cellular component	41.2	1.30e-05
microtubule	Hs	cellular component	41.2	1.30e-05
small ribosomal subunit	Hs	cellular component	88.2	7.78e-25
cytosolic small ribosomal subunit	Hs	cellular component	88.2	7.78e-25
intracellular ribonucleoprotein complex	Hs	cellular component	88.2	7.78e-25
polysomal ribosome	Hs	cellular component	88.2	7.78e-25
protein N-terminus binding	Hs	molecular function	88.2	7.78e-25
chaperone binding	Hs	molecular function	41.2	1.30e-05

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	Pfam	molecular function	2.2E-39
intracellular	Pfam	cellular component	2.2E-39
ribosome	Pfam	cellular component	2.2E-39
translation	Pfam	biological process	2.2E-39