Aniseed - Gene card

Gene Card

Best human hits

MATN2; MATN3; MATN4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011049

Gene Model ID

KH2012:KH.L132.16

Location

KhL132:111873..129949

Transcript Models and Sequences

KH2012:KH.L132.16.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000022834
ENSEMBL	ENSCING00000024614

Collections

Gene collection 1 (N. Satoh)

3 results

cilv070k02

Plate: R1CiGC44d15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

21 results

IPR Term	Analysis	Definition
EGF_Ca-bd_CS	ProSitePatterns	EGF-like calcium-binding, conserved site
EGF-like_dom	ProSiteProfiles	EGF-like domain
EGF-like_dom	SMART	EGF-like domain
Sushi_SCR_CCP_dom	SMART	Sushi/SCR/CCP domain
EGF-like_CS	ProSitePatterns	EGF-like, conserved site
EGF-type_Asp/Asn_hydroxyl_site	ProSitePatterns	EGF-type aspartate/asparagine hydroxylation site
EGF-like_Ca-bd_dom	SMART	EGF-like calcium-binding domain
Sushi_SCR_CCP_dom	ProSiteProfiles	Sushi/SCR/CCP domain
vWFA_dom_sf	Gene3D	von Willebrand factor A-like domain superfamily
VWF_A	ProSiteProfiles	von Willebrand factor, type A
C-type_lectin-like/link_sf	Gene3D	C-type lectin-like/link domain superfamily
EGF-like_Ca-bd_dom	Pfam	EGF-like calcium-binding domain
Growth_fac_rcpt_cys_sf	SUPERFAMILY	Growth factor receptor cysteine-rich domain superfamily
cEGF	Pfam	Complement Clr-like EGF domain
vWFA_dom_sf	SUPERFAMILY	von Willebrand factor A-like domain superfamily
C-type_lectin-like	SMART	C-type lectin-like
VWF_A	Pfam	von Willebrand factor, type A
C-type_lectin-like	ProSiteProfiles	C-type lectin-like
Sushi/SCR/CCP_sf	SUPERFAMILY	Sushi/SCR/CCP superfamily
VWF_A	SMART	von Willebrand factor, type A
CTDL_fold	SUPERFAMILY	C-type lectin fold

GOSlim

7 results

GO Term	Annotation Origin	Type
calcium ion binding	Blast	molecular function
protein binding	Blast	molecular function
extracellular region	Blast	cellular component
extracellular space	Blast	cellular component
endoplasmic reticulum lumen	Blast	cellular component
extracellular region part	Blast	cellular component
structural molecule activity	Blast	molecular function

GO (Orthology)