Aniseed - Gene card

Gene Card

Best human hits

PARN; PNLDC1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010899

Gene Model ID

KH2012:KH.L122.5

Location

KhL122:28982..33201

Transcript Models and Sequences

KH2012:KH.L122.5.v1.A.ND1-1
KH2012:KH.L122.5.v1.A.SL2-1
KH2012:KH.L122.5.v1.A.SL3-1
KH2012:KH.L122.5.v2.A.SL2-1
KH2012:KH.L122.5.v2.A.SL3-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000010142

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cilv006k10

Plate: R1CiGC25b07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
R3H_dom	ProSiteProfiles	R3H domain
RNaseH_sf	Gene3D	Ribonuclease H superfamily
RNaseH-like_sf	SUPERFAMILY	Ribonuclease H-like superfamily
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
R3H_dom_sf	SUPERFAMILY	R3H domain superfamily
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
R3H_dom_sf	Gene3D	R3H domain superfamily
RNase_CAF1	Pfam	Ribonuclease CAF1
PolyA-riboNase_RNA_binding	Pfam	Poly(A)-specific ribonuclease, RNA-binding

GOSlim

23 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Blast	cellular component
endoplasmic reticulum membrane	Blast	cellular component
cytosol	Orthology	cellular component
mRNA catabolic process	Orthology	biological process
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
hydrolase activity	Orthology	molecular function
protein kinase binding	Orthology	molecular function
cation binding	Orthology	molecular function
metal ion binding	Orthology	molecular function
nuclear-transcribed mRNA catabolic process	Orthology	biological process
RNA metabolic process	Orthology	biological process
gamete generation	Orthology	biological process
organelle organization	Orthology	biological process
DNA metabolic process	Orthology	biological process
transferase activity, transferring phosphorus-containing groups	Orthology	molecular function

GO (Orthology)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
nuclear-transcribed mRNA poly(A) tail shortening	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
nuclease activity	Hs	molecular function
exonuclease activity	Hs	molecular function
poly(A)-specific ribonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
mRNA catabolic process	Hs	biological process
female gamete generation	Hs	biological process
RNA modification	Hs	biological process
hydrolase activity	Hs	molecular function
protein kinase binding	Hs	molecular function
positive regulation of telomere maintenance via telomerase	Hs	biological process
cation binding	Hs	molecular function
regulation of mRNA stability	Hs	biological process
metal ion binding	Hs	molecular function
telomerase RNA binding	Hs	molecular function
RNA phosphodiester bond hydrolysis, exonucleolytic	Hs	biological process

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	438	3.67e-146
RNA binding	Hs	molecular function	438	3.67e-146
mRNA 3'-UTR binding	Hs	molecular function	438	3.67e-146
nuclease activity	Hs	molecular function	438	3.67e-146
exonuclease activity	Hs	molecular function	438	3.67e-146
poly(A)-specific ribonuclease activity	Hs	molecular function	438	3.67e-146
protein binding	Hs	molecular function	438	3.67e-146
nucleus	Hs	cellular component	438	3.67e-146
nucleolus	Hs	cellular component	438	3.67e-146
cytoplasm	Hs	cellular component	438	3.67e-146
endoplasmic reticulum	Hs	cellular component	162	6.84e-43
endoplasmic reticulum membrane	Hs	cellular component	162	6.84e-43
cytosol	Hs	cellular component	438	3.67e-146
membrane	Hs	cellular component	162	6.84e-43
integral component of membrane	Hs	cellular component	162	6.84e-43
hydrolase activity	Hs	molecular function	438	3.67e-146
protein kinase binding	Hs	molecular function	438	3.67e-146
cation binding	Hs	molecular function	438	3.67e-146
metal ion binding	Hs	molecular function	438	3.67e-146
telomerase RNA binding	Hs	molecular function	438	3.67e-146

GO (InterProScan)

7 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Gene3D	molecular function	4.7E-111
RNA binding	Pfam	molecular function	1.6E-22
poly(A)-specific ribonuclease activity	Pfam	molecular function	1.6E-22
nucleus	Pfam	cellular component	1.6E-22
cytoplasm	Pfam	cellular component	1.6E-22
mRNA catabolic process	Pfam	biological process	1.6E-22
metal ion binding	Pfam	molecular function	1.6E-22