Aniseed - Gene card

Gene 'KH2012:KH.L122.12'

Gene Card

Best human hits

SYT14; SYT16; SYT3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010891

Gene Model ID

KH2012:KH.L122.12

Location

KhL122:61135..74788

Transcript Models and Sequences

KH2012:KH.L122.12.v1.B.ND1-1
KH2012:KH.L122.12.v2.B.ND1-2
KH2012:KH.L122.12.v3.B.SL2-2

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000014826
ENSEMBL	ENSCING00000017959
NCBI Reference Sequence	XM_004226964.3
NCBI Reference Sequence	XM_009862791.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg052h13

Plate: R1CiGC23l02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
SYT16	PANTHER	Synaptotagmin-16
C2_dom	Pfam	C2 domain
C2_domain_sf	Gene3D	C2 domain superfamily

GOSlim

20 results

GO Term	Annotation Origin	Type
calcium ion binding	Orthology	molecular function
protein binding	Orthology	molecular function
endosome	Blast	cellular component
plasma membrane	Orthology	cellular component
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
cytoplasmic vesicle	Blast	cellular component
protein homodimerization activity	Orthology	molecular function
synapse	Blast	cellular component
metal ion binding	Blast	molecular function
protein heterodimerization activity	Orthology	molecular function
anion binding	Orthology	molecular function
membrane organization	Orthology	biological process
organelle organization	Orthology	biological process
intracellular organelle part	Blast	cellular component
whole membrane	Blast	cellular component
endomembrane system	Blast	cellular component
bounding membrane of organelle	Blast	cellular component
synapse part	Blast	cellular component
neuron part	Blast	cellular component

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
calcium ion binding	Hs	molecular function
protein binding	Hs	molecular function
phospholipid binding	Hs	molecular function
plasma membrane	Hs	cellular component
exocytosis	Hs	biological process
vesicle fusion	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
syntaxin binding	Hs	molecular function
clathrin binding	Hs	molecular function
protein homodimerization activity	Hs	molecular function
protein heterodimerization activity	Hs	molecular function

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
calcium ion binding	Hs	molecular function	153	1.26e-40
protein binding	Hs	molecular function	153	1.26e-40
phospholipid binding	Hs	molecular function	153	1.26e-40
calcium-dependent phospholipid binding	Hs	molecular function	60.5	9.79e-10
endosome	Hs	cellular component	60.5	9.79e-10
plasma membrane	Hs	cellular component	153	1.26e-40
membrane	Hs	cellular component	153	1.26e-40
integral component of membrane	Hs	cellular component	153	1.26e-40
syntaxin binding	Hs	molecular function	153	1.26e-40
clathrin binding	Hs	molecular function	153	1.26e-40
transport vesicle membrane	Hs	cellular component	60.5	9.79e-10
cytoplasmic vesicle	Hs	cellular component	60.5	9.79e-10
protein homodimerization activity	Hs	molecular function	153	1.26e-40
synapse	Hs	cellular component	60.5	9.79e-10
metal ion binding	Hs	molecular function	60.5	9.79e-10
protein heterodimerization activity	Hs	molecular function	153	1.26e-40
presynapse	Hs	cellular component	60.5	9.79e-10

GO (InterProScan)