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GENE CARD

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  1. Gene 'KH2012:KH.L122.1'

Gene Card

Best human hits

SRSF12; SRSF2; SRSF8

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010888

Gene Model ID

KH2012:KH.L122.1

Location

KhL122:62106..64910

Transcript Models and Sequences

  KH2012:KH.L122.1.v1.A.SL3-3
KH2012:KH.L122.1.v2.A.ND2-2
KH2012:KH.L122.1.v2.A.SL3-2
KH2012:KH.L122.1.v3.A.SL3-1
KH2012:KH.L122.1.v3.R.ND1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_002129890.3
Collections

Gateway full ORF

2 results

cima868089

Plate: VES66_M03

cien189425

Plate: VES99_A15

Gene collection 1 (N. Satoh)

1 result

cieg047b06

Plate: R1CiGC23i19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom ProSiteProfiles RNA recognition motif domain
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom SMART RNA recognition motif domain
RRM_dom_euk SMART RNA recognition motif domain, eukaryote
RRM_dom Pfam RNA recognition motif domain

GOSlim

24 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
transcription corepressor activity Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytosol Orthology cellular component
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear speck Orthology cellular component
unfolded protein binding Blast molecular function
extracellular exosome Orthology cellular component
negative regulation of nucleic acid-templated transcription Orthology biological process
regulation of gene expression Orthology biological process
protein kinase binding Orthology molecular function
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
transcription from RNA polymerase II promoter Orthology biological process
organic substance transport Orthology biological process
intracellular transport Orthology biological process
intracellular protein transport Orthology biological process
gene expression Orthology biological process
nuclear body Orthology cellular component

GO (Orthology)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
mitotic cell cycle Hs biological process
regulation of alternative mRNA splicing, via spliceosome Hs biological process
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
transcription corepressor activity Hs molecular function
RNA binding Hs molecular function
protein kinase C binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
cytosol Hs cellular component
termination of RNA polymerase II transcription Hs biological process
mRNA processing Hs biological process
RNA export from nucleus Hs biological process
mRNA export from nucleus Hs biological process
RNA splicing Hs biological process
nuclear speck Hs cellular component
mRNA 3'-end processing Hs biological process
interchromatin granule Hs cellular component
pre-mRNA binding Hs molecular function
regulation of RNA splicing Hs biological process
extracellular exosome Hs cellular component
negative regulation of nucleic acid-templated transcription Hs biological process

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 155 3.08e-48
transcription corepressor activity Hs molecular function 155 3.08e-48
RNA binding Hs molecular function 155 3.08e-48
protein kinase C binding Hs molecular function 155 3.08e-48
protein binding Hs molecular function 155 3.08e-48
nucleus Hs cellular component 155 3.08e-48
nucleoplasm Hs cellular component 155 3.08e-48
spliceosomal complex Hs cellular component 155 3.08e-48
cytosol Hs cellular component 155 3.08e-48
nuclear speck Hs cellular component 155 3.08e-48
interchromatin granule Hs cellular component 155 3.08e-48
pre-mRNA binding Hs molecular function 155 3.08e-48
RS domain binding Hs molecular function 81.3 5.61e-19
unfolded protein binding Hs molecular function 81.3 5.61e-19
extracellular exosome Hs cellular component 155 3.08e-48

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 5.37E-31

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