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GENE CARD

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  1. Gene 'KH2012:KH.L119.1'

Gene Card

Best human hits

CDA

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010845

Gene Model ID

KH2012:KH.L119.1

Location

KhL119:89580..91179

Transcript Models and Sequences

  KH2012:KH.L119.1.v1.A.SL1-1
KH2012:KH.L119.1.v1.A.SL2-1
KH2012:KH.L119.1.v1.A.SL3-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000010145
NCBI Reference Sequence XM_002128278.3
Collections

Gateway full ORF

1 result

cima831735

Plate: VES62_H05

Gene collection 1 (N. Satoh)

2 results

cilv034h13

Plate: R1CiGC27j24

citb033n10

Plate: R1CiGC32a15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
CMP_dCMP_dom Pfam Cytidine and deoxycytidylate deaminase domain
Cytidine_deaminase-like SUPERFAMILY Cytidine deaminase-like
APOBEC/CMP_deaminase_Zn-bd ProSitePatterns APOBEC/CMP deaminase, zinc-binding
CMP_dCMP_dom ProSiteProfiles Cytidine and deoxycytidylate deaminase domain
Cyt_deam_tetra TIGRFAM Cytidine deaminase, homotetrameric

GOSlim

14 results

GO Term Annotation Origin Type
nucleoside binding Blast molecular function
catalytic activity Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
cytosol Blast cellular component
zinc ion binding Blast molecular function
hydrolase activity Blast molecular function
identical protein binding Blast molecular function
protein homodimerization activity Blast molecular function
metal ion binding Blast molecular function
intracellular organelle part Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
intracellular organelle lumen Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleoside binding Hs molecular function 140 1.37e-43
catalytic activity Hs molecular function 140 1.37e-43
cytidine deaminase activity Hs molecular function 140 1.37e-43
protein binding Hs molecular function 140 1.37e-43
extracellular region Hs cellular component 140 1.37e-43
cytosol Hs cellular component 140 1.37e-43
zinc ion binding Hs molecular function 140 1.37e-43
hydrolase activity Hs molecular function 140 1.37e-43
secretory granule lumen Hs cellular component 140 1.37e-43
identical protein binding Hs molecular function 140 1.37e-43
protein homodimerization activity Hs molecular function 140 1.37e-43
metal ion binding Hs molecular function 140 1.37e-43
tertiary granule lumen Hs cellular component 140 1.37e-43
ficolin-1-rich granule lumen Hs cellular component 140 1.37e-43

GO (InterProScan)

5 results

GO Term Analysis Type e-value
catalytic activity SUPERFAMILY molecular function 3.51E-44
cytidine deaminase activity TIGRFAM molecular function 3.5E-45
zinc ion binding TIGRFAM molecular function 3.5E-45
cytidine deamination TIGRFAM biological process 3.5E-45
hydrolase activity ProSitePatterns molecular function

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