Gene Card
Best human hits
LEMD3; RBM23; RBM39
Unique Gene ID
Cirobu.g00010646
Gene Model ID
KH2012:KH.L108.5
Location
KhL108:188896..190391
Transcript Models and Sequences
KH2012:KH.L108.5.v1.A.SL1-1
KH2012:KH.L108.5.v1.A.SL2-1
KH2012:KH.L108.5.v1.A.SL3-1
KH2012:KH.L108.5.v1.A.SL4-1
External database links
1 result
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000020692 |
Gateway full ORF
2 results
cien163828
Plate: VES95_J15
cien185503
Plate: VES98_E23
Gene collection 1 (N. Satoh)
2 results
citb011o13
Plate: R1CiGC30e22
cieg041p21
Plate: R1CiGC22a14
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
7 results
| IPR Term | Analysis | Definition |
|---|---|---|
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| RRM_dom | SMART | RNA recognition motif domain |
| RRM_dom | Pfam | RNA recognition motif domain |
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
| RRM_dom | ProSiteProfiles | RNA recognition motif domain |
| RBM39_SF | TIGRFAM | Splicing factor, RBM39-like |
| RBM39_linker | Pfam | Splicing factor RBM39, linker |
GOSlim
16 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| nucleic acid binding | Blast | molecular function |
| DNA binding | Blast | molecular function |
| RNA binding | Blast | molecular function |
| protein binding | Blast | molecular function |
| nucleus | Blast | cellular component |
| nucleoplasm | Blast | cellular component |
| microtubule organizing center | Blast | cellular component |
| mRNA processing | InterProScan | biological process |
| microtubule cytoskeleton | Blast | cellular component |
| membrane | Blast | cellular component |
| integral component of membrane | Blast | cellular component |
| nuclear speck | Blast | cellular component |
| nuclear membrane | Blast | cellular component |
| macromolecular complex | Blast | cellular component |
| organelle inner membrane | Blast | cellular component |
| chromatin binding | Blast | molecular function |
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|
GO (Blast)
16 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 478 | 6.88e-166 |
| DNA binding | Hs | molecular function | 102 | 3.69e-23 |
| RNA binding | Hs | molecular function | 478 | 6.88e-166 |
| protein binding | Hs | molecular function | 478 | 6.88e-166 |
| nucleus | Hs | cellular component | 478 | 6.88e-166 |
| nuclear inner membrane | Hs | cellular component | 102 | 3.69e-23 |
| integral component of nuclear inner membrane | Hs | cellular component | 102 | 3.69e-23 |
| nucleoplasm | Hs | cellular component | 478 | 6.88e-166 |
| microtubule organizing center | Hs | cellular component | 478 | 6.88e-166 |
| microtubule cytoskeleton | Hs | cellular component | 478 | 6.88e-166 |
| membrane | Hs | cellular component | 315 | 1.69e-103 |
| integral component of membrane | Hs | cellular component | 102 | 3.69e-23 |
| nuclear speck | Hs | cellular component | 478 | 6.88e-166 |
| chromatin DNA binding | Hs | molecular function | 102 | 3.69e-23 |
| nuclear membrane | Hs | cellular component | 102 | 3.69e-23 |
| macromolecular complex | Hs | cellular component | 478 | 6.88e-166 |
GO (InterProScan)
4 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SUPERFAMILY | molecular function | 1.22E-29 |
| RNA binding | TIGRFAM | molecular function | 6.4E-139 |
| nucleus | TIGRFAM | cellular component | 6.4E-139 |
| mRNA processing | TIGRFAM | biological process | 6.4E-139 |
