Aniseed - Gene card

Gene 'KH2012:KH.C8.87'

Gene Card

Best human hits

SLC6A11; SLC6A12; SLC6A13

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009545

Gene Model ID

KH2012:KH.C8.87

Location

KhC8:3965688..3971279

Transcript Models and Sequences

KH2012:KH.C8.87.v1.A.SL1-1
KH2012:KH.C8.87.v2.A.ND2-2
KH2012:KH.C8.87.v3.A.SL1-3
KH2012:KH.C8.87.v4.A.ND3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000007229
NCBI Reference Sequence	XM_002126505.4

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

1 result

citb6g7

Plate: R1CiGC29h09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Na/ntran_symport	ProSiteProfiles	Sodium:neurotransmitter symporter
Na/ntran_symport	PANTHER	Sodium:neurotransmitter symporter
Na/ntran_symport	ProSitePatterns	Sodium:neurotransmitter symporter
Na/ntran_symport	Pfam	Sodium:neurotransmitter symporter
SNS_sf	SUPERFAMILY	Sodium:neurotransmitter symporter superfamily
Na/ntran_symport	PRINTS	Sodium:neurotransmitter symporter

GOSlim

13 results

GO Term	Annotation Origin	Type
protein binding	Blast	molecular function
cytoplasm	Blast	cellular component
plasma membrane	Blast	cellular component
integral component of plasma membrane	Blast	cellular component
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
cell projection	Blast	cellular component
transmembrane transport	Blast	biological process
extracellular exosome	Blast	cellular component
sodium ion transport	Blast	biological process
organic substance transport	Blast	biological process
ion transport	Blast	biological process
binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
transporter activity	Hs	molecular function	511	2.01e-175
neurotransmitter:sodium symporter activity	Hs	molecular function	511	2.01e-175
gamma-aminobutyric acid:sodium symporter activity	Hs	molecular function	511	2.01e-175
protein binding	Hs	molecular function	497	4.19e-170
cytoplasm	Hs	cellular component	511	2.01e-175
plasma membrane	Hs	cellular component	511	2.01e-175
integral component of plasma membrane	Hs	cellular component	511	2.01e-175
amino acid transmembrane transporter activity	Hs	molecular function	497	4.19e-170
symporter activity	Hs	molecular function	511	2.01e-175
membrane	Hs	cellular component	511	2.01e-175
integral component of membrane	Hs	cellular component	511	2.01e-175
neurotransmitter binding	Hs	molecular function	511	2.01e-175
cell projection	Hs	cellular component	511	2.01e-175
extracellular exosome	Hs	cellular component	508	1.37e-174

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
neurotransmitter:sodium symporter activity	PANTHER	molecular function	2.2E-219
neurotransmitter transport	PANTHER	biological process	2.2E-219
integral component of membrane	PANTHER	cellular component	2.2E-219