Aniseed - Gene card

Gene Card

Best human hits

NUBP1; NUBP2; NUBPL

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009227

Gene Model ID

KH2012:KH.C8.580

Location

KhC8:841297..842798

Transcript Models and Sequences

KH2012:KH.C8.580.v1.A.nonSL1-1
KH2012:KH.C8.580.v1.A.nonSL2-1
KH2012:KH.C8.580.v1.A.nonSL3-1
KH2012:KH.C8.580.v1.A.nonSL4-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000001267

Collections

Gateway full ORF

2 results

cima858736

Plate: VES64_O08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Mrp/NBP35_ATP-bd	PANTHER	Mrp/NBP35 ATP-binding protein
YlxH/NBP35	Pfam	Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35
Mrp_CS	ProSitePatterns	Mrp, conserved site
Mrp/NBP35_ATP-bd	Hamap	Mrp/NBP35 ATP-binding protein
NUBP1/Nbp35	Hamap	Cytosolic Fe-S cluster assembly factor NUBP1/Nbp35
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
Mrp/NBP35_ATP-bd	CDD	Mrp/NBP35 ATP-binding protein

GOSlim

27 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Blast	cellular component
mitochondrial matrix	Blast	cellular component
microtubule organizing center	Orthology	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Orthology	cellular component
plasma membrane	Orthology	cellular component
cell projection organization	Orthology	biological process
cell projection	Orthology	cellular component
metal ion binding	Orthology	molecular function
extracellular exosome	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
organelle	Orthology	cellular component
plasma membrane region	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cellular process	Orthology	biological process
cell	Orthology	cellular component
organelle organization	Orthology	biological process
microtubule-based process	Orthology	biological process
cellular metabolic process	Orthology	biological process
cofactor binding	Orthology	molecular function
cellular protein localization	Orthology	biological process
centrosome	Blast	cellular component

GO (Orthology)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
centriole	Hs	cellular component
microtubule organizing center	Hs	cellular component
cytosol	Hs	cellular component
cytoskeleton	Hs	cellular component
plasma membrane	Hs	cellular component
cilium	Hs	cellular component
cellular iron ion homeostasis	Hs	biological process
negative regulation of centrosome duplication	Hs	biological process
cell growth	Hs	biological process
iron-sulfur cluster assembly	Hs	biological process
cell projection organization	Hs	biological process
cell projection	Hs	cellular component
metal ion binding	Hs	molecular function
iron-sulfur cluster binding	Hs	molecular function
4 iron, 4 sulfur cluster binding	Hs	molecular function
centrosome localization	Hs	biological process
extracellular exosome	Hs	cellular component
protein localization to cell cortex	Hs	biological process

GO (Blast)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	432	2.59e-153
protein binding	Hs	molecular function	432	2.59e-153
ATP binding	Hs	molecular function	432	2.59e-153
nucleus	Hs	cellular component	432	2.59e-153
cytoplasm	Hs	cellular component	432	2.59e-153
mitochondrion	Hs	cellular component	175	1.31e-52
mitochondrial matrix	Hs	cellular component	175	1.31e-52
centriole	Hs	cellular component	432	2.59e-153
microtubule organizing center	Hs	cellular component	432	2.59e-153
cytosol	Hs	cellular component	432	2.59e-153
cytoskeleton	Hs	cellular component	432	2.59e-153
plasma membrane	Hs	cellular component	432	2.59e-153
cilium	Hs	cellular component	432	2.59e-153
spindle pole centrosome	Hs	cellular component	272	4.59e-91
cell projection	Hs	cellular component	432	2.59e-153
metal ion binding	Hs	molecular function	432	2.59e-153
iron-sulfur cluster binding	Hs	molecular function	432	2.59e-153
4 iron, 4 sulfur cluster binding	Hs	molecular function	432	2.59e-153
extracellular exosome	Hs	cellular component	432	2.59e-153

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
ATP binding	ProSitePatterns	molecular function
iron-sulfur cluster assembly	Hamap	biological process	49.059
iron-sulfur cluster binding	Hamap	molecular function	49.059
4 iron, 4 sulfur cluster binding	Hamap	molecular function	49.059