Aniseed - Gene card

Gene Card

Best human hits

GNPTG; PRKCSH

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008987

Gene Model ID

KH2012:KH.C8.361

Location

KhC8:4266717..4279045

Transcript Models and Sequences

KH2012:KH.C8.361.v1.A.ND2-1
KH2012:KH.C8.361.v2.A.SL1-1
KH2012:KH.C8.361.v3.A.SL1-1
KH2012:KH.C8.361.v4.A.SL1-1

External Database Gene Card

External database links

6 results

Database	Gene ID
ENSEMBL	ENSCING00000007367
ENSEMBL	ENSCING00000016831
ENSEMBL	ENSCING00000016834
NCBI Reference Sequence	XM_009861051.2
NCBI Reference Sequence	XM_009861052.2
NCBI Reference Sequence	XM_018812789.1

Collections

Gateway full ORF

1 result

Gene collection 1 (N. Satoh)

1 result

ciad048h06

Plate: R1CiGC05m17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
PRKCSH	Pfam	Glucosidase 2 subunit beta-like
Glucosidase_2_bsu	PANTHER	Glucosidase 2 subunit beta
Man6P_isomerase_rcpt-bd_dom_sf	Gene3D	Mannose-6-phosphate receptor binding domain superfamily
LDrepeatLR_classA_rpt	CDD	Low-density lipoprotein (LDL) receptor class A repeat
LDrepeatLR_classA_rpt	ProSiteProfiles	Low-density lipoprotein (LDL) receptor class A repeat
PRKCSH_N	Pfam	Glucosidase II beta subunit, N-terminal

GOSlim

25 results

GO Term	Annotation Origin	Type
Golgi membrane	Blast	cellular component
RNA binding	Orthology	molecular function
calcium ion binding	Orthology	molecular function
protein binding	Orthology	molecular function
extracellular region	Blast	cellular component
intracellular	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum lumen	Orthology	cellular component
Golgi apparatus	Blast	cellular component
protein folding	Orthology	biological process
nitrogen compound metabolic process	Orthology	biological process
membrane	Blast	cellular component
intracellular signal transduction	Orthology	biological process
protein homodimerization activity	Blast	molecular function
intracellular membrane-bounded organelle	Blast	cellular component
metal ion binding	Orthology	molecular function
extracellular exosome	Blast	cellular component
animal organ development	Orthology	biological process
protein kinase binding	Orthology	molecular function
protein metabolic process	Orthology	biological process
neuron projection development	Orthology	biological process
cellular protein modification process	Orthology	biological process
protein oligomerization	Orthology	biological process
system development	Orthology	biological process
transferase activity, transferring phosphorus-containing groups	Blast	molecular function

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
liver development	Hs	biological process
RNA binding	Hs	molecular function
protein kinase C binding	Hs	molecular function
calcium ion binding	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum lumen	Hs	cellular component
protein folding	Hs	biological process
N-glycan processing	Hs	biological process
nitrogen compound metabolic process	Hs	biological process
negative regulation of neuron projection development	Hs	biological process
intracellular signal transduction	Hs	biological process
post-translational protein modification	Hs	biological process
ion channel binding	Hs	molecular function
metal ion binding	Hs	molecular function
phosphoprotein binding	Hs	molecular function
protein heterooligomerization	Hs	biological process
renal system development	Hs	biological process

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
Golgi membrane	Hs	cellular component	59.7	1.11e-09
RNA binding	Hs	molecular function	365	6.60e-121
UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity	Hs	molecular function	59.7	1.11e-09
protein kinase C binding	Hs	molecular function	365	6.60e-121
calcium ion binding	Hs	molecular function	365	6.60e-121
protein binding	Hs	molecular function	365	6.60e-121
extracellular region	Hs	cellular component	59.7	1.11e-09
intracellular	Hs	cellular component	365	6.60e-121
endoplasmic reticulum	Hs	cellular component	365	6.60e-121
endoplasmic reticulum lumen	Hs	cellular component	365	6.60e-121
Golgi apparatus	Hs	cellular component	59.7	1.11e-09
membrane	Hs	cellular component	59.7	1.11e-09
protein homodimerization activity	Hs	molecular function	59.7	1.11e-09
intracellular membrane-bounded organelle	Hs	cellular component	59.7	1.11e-09
ion channel binding	Hs	molecular function	365	6.60e-121
metal ion binding	Hs	molecular function	365	6.60e-121
phosphoprotein binding	Hs	molecular function	365	6.60e-121
extracellular exosome	Hs	cellular component	59.7	1.11e-09

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
protein binding	CDD	molecular function	7.42853E-5
N-glycan processing	PANTHER	biological process	2.2E-127