Aniseed - Gene card

Gene 'KH2012:KH.C9.579' >

Gene Card

Best human hits

DCP2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008344

Gene Model ID

KH2012:KH.C7.492

Location

KhC7:1669760..1672127

Transcript Models and Sequences

KH2012:KH.C7.492.v1.A.SL2-1
KH2012:KH.C7.492.v1.A.SL3-1
KH2012:KH.C7.492.v2.A.SL1-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000023586

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg033d12

Plate: R1CiGC20n08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
NUDIX_hydrolase_CS	ProSitePatterns	NUDIX hydrolase, conserved site
NUDIX_hydrolase-like_dom_sf	SUPERFAMILY	NUDIX hydrolase-like domain superfamily
NUDIX_hydrolase_dom	Pfam	NUDIX hydrolase domain
NUDIX_hydrolase_dom	ProSiteProfiles	NUDIX hydrolase domain
DCP2_BoxA_sf	SUPERFAMILY	mRNA decapping protein 2, Box A domain superfamily
DCP2_BoxA_sf	Gene3D	mRNA decapping protein 2, Box A domain superfamily
DCP2_BoxA	SMART	mRNA decapping protein 2, Box A domain
DCP2_BoxA	Pfam	mRNA decapping protein 2, Box A domain

GOSlim

21 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
mRNA catabolic process	Orthology	biological process
hydrolase activity	Orthology	molecular function
cell junction	Orthology	cellular component
metal ion binding	Orthology	molecular function
nuclear-transcribed mRNA catabolic process	Orthology	biological process
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component
RNA metabolic process	Orthology	biological process
transition metal ion binding	Orthology	molecular function
organelle organization	Orthology	biological process
DNA metabolic process	Orthology	biological process
transferase activity, transferring phosphorus-containing groups	Orthology	molecular function
pyrophosphatase activity	Orthology	molecular function

GO (Orthology)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
deadenylation-dependent decapping of nuclear-transcribed mRNA	Hs	biological process
P-body	Hs	cellular component
RNA binding	Hs	molecular function
5'-3' exoribonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
mRNA catabolic process	Hs	biological process
RISC complex	Hs	cellular component
hydrolase activity	Hs	molecular function
exoribonuclease activity, producing 5'-phosphomonoesters	Hs	molecular function
cell junction	Hs	cellular component
manganese ion binding	Hs	molecular function
negative regulation of telomere maintenance via telomerase	Hs	biological process
cytoplasmic ribonucleoprotein granule	Hs	cellular component
regulation of mRNA stability	Hs	biological process
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	Hs	biological process
metal ion binding	Hs	molecular function
m7G(5')pppN diphosphatase activity	Hs	molecular function
telomerase RNA binding	Hs	molecular function
RNA phosphodiester bond hydrolysis, exonucleolytic	Hs	biological process

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
P-body	Hs	cellular component	301	3.09e-99
RNA binding	Hs	molecular function	301	3.09e-99
5'-3' exoribonuclease activity	Hs	molecular function	301	3.09e-99
protein binding	Hs	molecular function	301	3.09e-99
nucleus	Hs	cellular component	301	3.09e-99
nucleoplasm	Hs	cellular component	301	3.09e-99
cytoplasm	Hs	cellular component	301	3.09e-99
cytosol	Hs	cellular component	301	3.09e-99
RISC complex	Hs	cellular component	301	3.09e-99
hydrolase activity	Hs	molecular function	301	3.09e-99
exoribonuclease activity, producing 5'-phosphomonoesters	Hs	molecular function	301	3.09e-99
cell junction	Hs	cellular component	301	3.09e-99
manganese ion binding	Hs	molecular function	301	3.09e-99
cytoplasmic ribonucleoprotein granule	Hs	cellular component	301	3.09e-99
metal ion binding	Hs	molecular function	301	3.09e-99
m7G(5')pppN diphosphatase activity	Hs	molecular function	301	3.09e-99
telomerase RNA binding	Hs	molecular function	301	3.09e-99

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
RNA binding	Gene3D	molecular function	3.4E-90
hydrolase activity	Gene3D	molecular function	3.4E-90
manganese ion binding	Gene3D	molecular function	3.4E-90