- Gene 'KH2012:KH.C7.472'
Gene Card
Best human hits
HOXB13; HOXC12; HOXD12
Unique Gene ID
Cirobu.g00008322
Gene Model ID
KH2012:KH.C7.472
Location
KhC7:2706848..2709180
Transcript Models and Sequences
External database links
2 results
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000007040 |
| NCBI Reference Sequence | NM_001078268.1 |
Gateway full ORF
1 result
cien76355
Plate: VES82_I08
Gene collection 1 (N. Satoh)
1 result
cilv047h06
Plate: R1CiGC44c18
n/a
You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see how you can interact with this tree
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
6 results
| IPR Term | Analysis | Definition |
|---|---|---|
| Homeobox_dom | CDD | Homeobox domain |
| Homeobox_dom | Pfam | Homeobox domain |
| Homeobox_dom | SMART | Homeobox domain |
| Homeobox_CS | ProSitePatterns | Homeobox, conserved site |
| Homeobox_dom | ProSiteProfiles | Homeobox domain |
| Homeobox-like_sf | SUPERFAMILY | Homeobox-like domain superfamily |
GOSlim
10 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| negative regulation of transcription from RNA polymerase II promoter | Blast | biological process |
| RNA polymerase II transcription factor activity, sequence-specific DNA binding | Blast | molecular function |
| DNA binding | Blast | molecular function |
| protein binding | Blast | molecular function |
| nucleus | Blast | cellular component |
| nucleoplasm | Blast | cellular component |
| regulation of transcription, DNA-templated | InterProScan | biological process |
| sequence-specific DNA binding | Blast | molecular function |
| intracellular part | Blast | cellular component |
| macromolecular complex | Blast | cellular component |
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|
GO (Blast)
8 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| RNA polymerase II transcription factor activity, sequence-specific DNA binding | Hs | molecular function | 90.1 | 3.47e-20 |
| transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding | Hs | molecular function | 81.3 | 4.67e-17 |
| DNA binding | Hs | molecular function | 90.1 | 3.47e-20 |
| protein binding | Hs | molecular function | 90.1 | 3.47e-20 |
| nucleus | Hs | cellular component | 90.1 | 3.47e-20 |
| nucleoplasm | Hs | cellular component | 81.3 | 4.67e-17 |
| transcription factor complex | Hs | cellular component | 90.1 | 3.47e-20 |
| sequence-specific DNA binding | Hs | molecular function | 90.1 | 3.47e-20 |
GO (InterProScan)
3 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| DNA binding | SMART | molecular function | 2.7E-23 |
| regulation of transcription, DNA-templated | ProSitePatterns | biological process | |
| sequence-specific DNA binding | ProSitePatterns | molecular function |
