Aniseed - Gene card

Gene 'KH2012:KH.C7.314'

Gene Card

Best human hits

MED30

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008150

Gene Model ID

KH2012:KH.C7.314

Location

KhC7:5562897..5565447

Transcript Models and Sequences

KH2012:KH.C7.314.v1.A.nonSL10-1
KH2012:KH.C7.314.v1.A.nonSL2-1
KH2012:KH.C7.314.v1.A.nonSL3-1
KH2012:KH.C7.314.v1.A.nonSL4-1
KH2012:KH.C7.314.v1.A.nonSL6-1
KH2012:KH.C7.314.v1.A.nonSL7-1
KH2012:KH.C7.314.v1.A.nonSL8-1
KH2012:KH.C7.314.v1.A.nonSL9-1
KH2012:KH.C7.314.v1.A.SL1-1
KH2012:KH.C7.314.v1.A.SL2-1
KH2012:KH.C7.314.v1.A.SL5-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000011828
NCBI Reference Sequence	XM_002126619.4
NCBI Reference Sequence	XM_018812509.1

Collections

Gene collection 1 (N. Satoh)

1 result

cicl059j10

Plate: R1CiGC15i17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
Mediator_Med30_met	PANTHER	Mediator complex, subunit Med30, metazoa
Mediator_Med30_met	Pfam	Mediator complex, subunit Med30, metazoa

GOSlim

11 results

GO Term	Annotation Origin	Type
transcription cofactor activity	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
intracellular part	Blast	cellular component
macromolecular complex	Blast	cellular component
nucleoplasm part	Blast	cellular component
transcription coactivator activity	Blast	molecular function
receptor binding	Blast	molecular function
transcription factor binding	Blast	molecular function
ubiquitin-protein transferase activity	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
ubiquitin ligase complex	Hs	cellular component	103	1.82e-28
RNA polymerase II transcription cofactor activity	Hs	molecular function	103	1.82e-28
transcription cofactor activity	Hs	molecular function	103	1.82e-28
receptor activity	Hs	molecular function	103	1.82e-28
protein binding	Hs	molecular function	103	1.82e-28
nucleus	Hs	cellular component	103	1.82e-28
nucleoplasm	Hs	cellular component	103	1.82e-28
mediator complex	Hs	cellular component	103	1.82e-28
ligand-dependent nuclear receptor transcription coactivator activity	Hs	molecular function	103	1.82e-28
vitamin D receptor binding	Hs	molecular function	103	1.82e-28
thyroid hormone receptor binding	Hs	molecular function	103	1.82e-28
ubiquitin protein ligase activity	Hs	molecular function	103	1.82e-28

GO (InterProScan)

No result

GO Term	Analysis	Type	e-value