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Gene Card

Best human hits

CHRNA1; CHRNA3; CHRNA6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008117

Gene Model ID

KH2012:KH.C7.285

Location

KhC7:2779627..2785732

Transcript Models and Sequences

  KH2012:KH.C7.285.v1.C.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000011937
Collections

Gateway full ORF

1 result

cien33776

Plate: VES75_G17

Gene collection 1 (N. Satoh)

1 result

citb5d9

Plate: R1CiGC29e14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Neur_chan_lig-bd_sf SUPERFAMILY Neurotransmitter-gated ion-channel ligand-binding domain superfamily
Neur_channel PRINTS Neurotransmitter-gated ion-channel
Neurotransmitter_ion_chnl_CS ProSitePatterns Neurotransmitter-gated ion-channel, conserved site
Neur_channel PANTHER Neurotransmitter-gated ion-channel
Neur_chan_lig-bd Pfam Neurotransmitter-gated ion-channel ligand-binding domain
Neuro-gated_channel_TM_sf SUPERFAMILY Neurotransmitter-gated ion-channel transmembrane domain superfamily
Neurotrans-gated_channel_TM Pfam Neurotransmitter-gated ion-channel transmembrane domain
Nicotinic_acetylcholine_rcpt PRINTS Nicotinic acetylcholine receptor
Neur_chan_lig-bd_sf Gene3D Neurotransmitter-gated ion-channel ligand-binding domain superfamily

GOSlim

27 results

GO Term Annotation Origin Type
transmembrane signaling receptor activity Blast molecular function
protein binding Blast molecular function
plasma membrane Blast cellular component
ion transport Blast biological process
cation transport Blast biological process
signal transduction Blast biological process
chemical synaptic transmission Blast biological process
cell surface Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
cell junction Blast cellular component
neuronal cell body Blast cellular component
synapse Blast cellular component
postsynaptic membrane Blast cellular component
transmembrane transport Blast biological process
integral component of plasma membrane Blast cellular component
macromolecular complex Blast cellular component
organelle Blast cellular component
postsynapse Blast cellular component
neuron part Blast cellular component
cation binding Blast molecular function
cell surface receptor signaling pathway Blast biological process
nervous system process Blast biological process
signaling receptor activity Blast molecular function
binding Blast molecular function
membrane raft Blast cellular component
plasma membrane region Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transmembrane signaling receptor activity Hs molecular function 390 3.18e-132
ion channel activity Hs molecular function 390 3.18e-132
extracellular ligand-gated ion channel activity Hs molecular function 390 3.18e-132
protein binding Hs molecular function 357 5.72e-119
plasma membrane Hs cellular component 390 3.18e-132
acetylcholine-gated channel complex Hs cellular component 390 3.18e-132
cell surface Hs cellular component 390 3.18e-132
postsynaptic density Hs cellular component 357 5.72e-119
ligand-gated ion channel activity Hs molecular function 390 3.18e-132
acetylcholine receptor activity Hs molecular function 390 3.18e-132
membrane Hs cellular component 390 3.18e-132
integral component of membrane Hs cellular component 390 3.18e-132
acetylcholine-gated cation-selective channel activity Hs molecular function 390 3.18e-132
serotonin-gated cation-selective channel activity Hs molecular function 357 5.72e-119
cell junction Hs cellular component 390 3.18e-132
dendrite Hs cellular component 357 5.72e-119
neuromuscular junction Hs cellular component 390 3.18e-132
acetylcholine binding Hs molecular function 390 3.18e-132
neuronal cell body Hs cellular component 357 5.72e-119
plasma membrane raft Hs cellular component 357 5.72e-119
synapse Hs cellular component 390 3.18e-132
postsynaptic membrane Hs cellular component 390 3.18e-132

GO (InterProScan)

8 results

GO Term Analysis Type e-value
transmembrane signaling receptor activity PANTHER molecular function 1.5E-120
ion channel activity PANTHER molecular function 1.5E-120
extracellular ligand-gated ion channel activity Gene3D molecular function 8.1E-68
ion transport Gene3D biological process 8.1E-68
integral component of membrane PANTHER cellular component 1.5E-120
acetylcholine-gated cation-selective channel activity PRINTS molecular function 1.7E-17
ion transmembrane transport PANTHER biological process 1.5E-120
postsynaptic membrane PRINTS cellular component 1.7E-17

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