Aniseed - Gene card

Gene 'KH2012:KH.C7.212'

Gene Card

Best human hits

MCCC1; PC; PCCA

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008039

Gene Model ID

KH2012:KH.C7.212

Location

KhC7:5729944..5738965

Transcript Models and Sequences

KH2012:KH.C7.212.v1.A.nonSL2-1
KH2012:KH.C7.212.v1.A.nonSL3-1
KH2012:KH.C7.212.v1.A.nonSL4-1
KH2012:KH.C7.212.v1.R.ND1-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000019260
ENSEMBL	ENSCING00000020099
NCBI Reference Sequence	XM_002128332.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb1l8

Plate: R1CiGC28j21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term	Analysis	Definition
PreATP-grasp_dom_sf	SUPERFAMILY	Pre-ATP-grasp domain superfamily
Rudment_hybrid_motif	SUPERFAMILY	Rudiment single hybrid motif
CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
BC-like_N	Pfam	Biotin carboxylase-like, N-terminal domain
Biotin_lipoyl	Pfam	Biotin/lipoyl attachment
ATP-grasp	ProSiteProfiles	ATP-grasp fold
Biotin_carboxylation_dom	ProSiteProfiles	Biotin carboxylation domain
Single_hybrid_motif	SUPERFAMILY	Single hybrid motif
Biotin_COase_C	Pfam	Biotin carboxylase, C-terminal
Biotin_COase_C	SMART	Biotin carboxylase, C-terminal
CbamoylP_synth_lsu-like_ATP-bd	Pfam	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
Biotin_BS	ProSitePatterns	Biotin-binding site
Biotin_lipoyl	ProSiteProfiles	Biotin/lipoyl attachment

GOSlim

21 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
catalytic activity	Blast	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
cytoplasm	Blast	cellular component
mitochondrion	Orthology	cellular component
mitochondrial inner membrane	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
cytosol	Orthology	cellular component
ligase activity	Orthology	molecular function
enzyme binding	Blast	molecular function
identical protein binding	Blast	molecular function
metal ion binding	Orthology	molecular function
mitochondrial part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
small molecule binding	Orthology	molecular function
anion binding	Orthology	molecular function
heterocyclic compound binding	Orthology	molecular function
organic cyclic compound binding	Orthology	molecular function
coenzyme binding	Orthology	molecular function
protein oligomerization	Orthology	biological process

GO (Orthology)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
3-methylcrotonyl-CoA carboxylase complex, mitochondrial	Hs	cellular component
biotin carboxylase activity	Hs	molecular function
methylcrotonoyl-CoA carboxylase activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
mitochondrion	Hs	cellular component
mitochondrial inner membrane	Hs	cellular component
mitochondrial matrix	Hs	cellular component
cytosol	Hs	cellular component
branched-chain amino acid catabolic process	Hs	biological process
biotin binding	Hs	molecular function
ligase activity	Hs	molecular function
metal ion binding	Hs	molecular function
protein heterooligomerization	Hs	biological process
methylcrotonoyl-CoA carboxylase complex	Hs	cellular component

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	775	0.0
3-methylcrotonyl-CoA carboxylase complex, mitochondrial	Hs	cellular component	775	0.0
catalytic activity	Hs	molecular function	368	7.26e-113
biotin carboxylase activity	Hs	molecular function	775	0.0
methylcrotonoyl-CoA carboxylase activity	Hs	molecular function	775	0.0
propionyl-CoA carboxylase activity	Hs	molecular function	467	6.26e-155
pyruvate carboxylase activity	Hs	molecular function	368	7.26e-113
protein binding	Hs	molecular function	775	0.0
ATP binding	Hs	molecular function	775	0.0
cytoplasm	Hs	cellular component	368	7.26e-113
mitochondrion	Hs	cellular component	775	0.0
mitochondrial inner membrane	Hs	cellular component	775	0.0
mitochondrial matrix	Hs	cellular component	775	0.0
cytosol	Hs	cellular component	775	0.0
biotin binding	Hs	molecular function	775	0.0
ligase activity	Hs	molecular function	775	0.0
enzyme binding	Hs	molecular function	467	6.26e-155
identical protein binding	Hs	molecular function	368	7.26e-113
metal ion binding	Hs	molecular function	775	0.0
methylcrotonoyl-CoA carboxylase complex	Hs	cellular component	775	0.0

GO (InterProScan)