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GENE CARD

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Gene Card

Best human hits

AFG3L2; SPG7; YME1L1

Unique Gene ID

Cirobu.g00007763

Gene Model ID

KH2012:KH.C6.236

Location

KhC6:1733391..1741872

Transcript Models and Sequences

  KH2012:KH.C6.236.v1.A.SL1-1

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

2 results

cien112760

Plate: VES88_M02

cien56893

Plate: VES79_C06

Gene collection 1 (N. Satoh)

1 result

cicl030p07

Plate: R1CiGC12c18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Peptidase_M41-like SUPERFAMILY Peptidase M41-like
AAA+_ATPase SMART AAA+ ATPase domain
Peptidase_M41 Pfam Peptidase M41
FtsH TIGRFAM Peptidase, FtsH
ATPase_AAA_core Pfam ATPase, AAA-type, core

GOSlim

30 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
metalloendopeptidase activity Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
mitochondrion Orthology cellular component
mitochondrial inner membrane Orthology cellular component
proteolysis Orthology biological process
nervous system development Orthology biological process
peptidase activity Orthology molecular function
metallopeptidase activity Orthology molecular function
zinc ion binding Orthology molecular function
membrane Orthology cellular component
integral component of membrane Orthology cellular component
nuclear body Blast cellular component
hydrolase activity Orthology molecular function
metal ion binding Orthology molecular function
unfolded protein binding Orthology molecular function
macromolecular complex Orthology cellular component
mitochondrial envelope Orthology cellular component
metal ion transport Orthology biological process
transmembrane transport Orthology biological process
organelle organization Orthology biological process
cell projection part Orthology cellular component
axon Orthology cellular component
microtubule-based movement Orthology biological process
intracellular transport Orthology biological process
cytoplasmic part Orthology cellular component
membrane organization Orthology biological process
peptidase activity, acting on L-amino acid peptides Blast molecular function
nucleoside-triphosphatase activity Blast molecular function

GO (Orthology)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleotide binding Hs molecular function
metalloendopeptidase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
mitochondrion Hs cellular component
mitochondrial inner membrane Hs cellular component
m-AAA complex Hs cellular component
mitochondrial permeability transition pore complex Hs cellular component
proteolysis Hs biological process
mitochondrial calcium ion transmembrane transport Hs biological process
mitochondrion organization Hs biological process
nervous system development Hs biological process
anterograde axonal transport Hs biological process
peptidase activity Hs molecular function
metallopeptidase activity Hs molecular function
zinc ion binding Hs molecular function
membrane Hs cellular component
integral component of membrane Hs cellular component
hydrolase activity Hs molecular function
metal ion binding Hs molecular function
regulation of mitochondrial membrane permeability Hs biological process
unfolded protein binding Hs molecular function
axon cytoplasm Hs cellular component

GO (Blast)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 557 0.0
ATP-dependent peptidase activity Hs molecular function 317 7.30e-97
metalloendopeptidase activity Hs molecular function 557 0.0
protein binding Hs molecular function 557 0.0
ATP binding Hs molecular function 557 0.0
mitochondrion Hs cellular component 557 0.0
mitochondrial inner membrane Hs cellular component 557 0.0
m-AAA complex Hs cellular component 557 0.0
mitochondrial permeability transition pore complex Hs cellular component 557 0.0
peptidase activity Hs molecular function 557 0.0
metallopeptidase activity Hs molecular function 557 0.0
zinc ion binding Hs molecular function 557 0.0
membrane Hs cellular component 557 0.0
integral component of membrane Hs cellular component 557 0.0
nuclear body Hs cellular component 317 7.30e-97
hydrolase activity Hs molecular function 557 0.0
metal ion binding Hs molecular function 557 0.0
unfolded protein binding Hs molecular function 557 0.0
axon cytoplasm Hs cellular component 557 0.0

GO (InterProScan)

4 results

GO Term Analysis Type e-value
metalloendopeptidase activity TIGRFAM molecular function 1.5E-166
ATP binding Pfam molecular function 4.7E-64
proteolysis Pfam biological process 4.7E-64
membrane TIGRFAM cellular component 1.5E-166