Aniseed - Gene card

Gene 'KH2012:KH.C6.210'

Gene Card

Best human hits

SNIP1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007735

Gene Model ID

KH2012:KH.C6.210

Location

KhC6:1899640..1903354

Transcript Models and Sequences

KH2012:KH.C6.210.v1.A.SL1-1
KH2012:KH.C6.210.v2.A.SL2-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000020927
ENSEMBL	ENSCING00000022036
NCBI Reference Sequence	XM_009860550.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cieg045h19

Plate: R1CiGC22j08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
FHA_dom	SMART	Forkhead-associated (FHA) domain
FHA_dom	ProSiteProfiles	Forkhead-associated (FHA) domain
SMAD_FHA_dom_sf	SUPERFAMILY	SMAD/FHA domain superfamily
FHA_dom	CDD	Forkhead-associated (FHA) domain
FHA_dom	Pfam	Forkhead-associated (FHA) domain

GOSlim

11 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
regulation of transcription, DNA-templated	Orthology	biological process
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
intracellular signal transduction	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
cellular process	Orthology	biological process
RNA processing	Orthology	biological process

GO (Orthology)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytosol	Hs	cellular component
regulation of transcription, DNA-templated	Hs	biological process
I-kappaB kinase/NF-kappaB signaling	Hs	biological process
gene silencing by RNA	Hs	biological process
production of miRNAs involved in gene silencing by miRNA	Hs	biological process

GO (Blast)

6 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	278	4.58e-89
mRNA binding	Hs	molecular function	278	4.58e-89
protein binding	Hs	molecular function	278	4.58e-89
nucleus	Hs	cellular component	278	4.58e-89
nucleoplasm	Hs	cellular component	278	4.58e-89
cytosol	Hs	cellular component	278	4.58e-89

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	SUPERFAMILY	molecular function	6.5E-25