Aniseed - Gene card

Gene Card

Best human hits

NASP

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007535

Gene Model ID

KH2012:KH.C5.63

Location

KhC5:611189..619022

Transcript Models and Sequences

External Database Gene Card

External database links

3 results

Database	Gene ID
NCBI Reference Sequence	XM_002120847.4
NCBI Reference Sequence	XM_018812116.1
NCBI Reference Sequence	XM_018812117.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

ciad045i14

Plate: R1CiGC04j12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
TPR_repeat	ProSiteProfiles	Tetratricopeptide repeat
TPR-like_helical_dom_sf	SUPERFAMILY	Tetratricopeptide-like helical domain superfamily
Tetratricopeptide_SHNi-TPR_dom	Pfam	Tetratricopeptide, SHNi-TPR domain
TPR-contain_dom	ProSiteProfiles	Tetratricopeptide repeat-containing domain
TPR-like_helical_dom_sf	Gene3D	Tetratricopeptide-like helical domain superfamily
TPR_repeat	SMART	Tetratricopeptide repeat

GOSlim

16 results

GO Term	Annotation Origin	Type
G1/S transition of mitotic cell cycle	Orthology	biological process
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
DNA replication	Orthology	biological process
cell cycle	Orthology	biological process
cell proliferation	Orthology	biological process
protein transport	Orthology	biological process
macromolecular complex	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
organelle organization	Orthology	biological process
DNA binding	Orthology	molecular function
reproductive process	Orthology	biological process
animal organ development	Orthology	biological process

GO (Orthology)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
G1/S transition of mitotic cell cycle	Hs	biological process
nuclear chromatin	Hs	cellular component
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
DNA replication	Hs	biological process
DNA replication-independent nucleosome assembly	Hs	biological process
cell cycle	Hs	biological process
cell proliferation	Hs	biological process
male gonad development	Hs	biological process
protein transport	Hs	biological process
macromolecular complex	Hs	cellular component
histone binding	Hs	molecular function
histone exchange	Hs	biological process

GO (Blast)

7 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromatin	Hs	cellular component	134	1.28e-33
protein binding	Hs	molecular function	134	1.28e-33
nucleus	Hs	cellular component	134	1.28e-33
nucleoplasm	Hs	cellular component	134	1.28e-33
cytoplasm	Hs	cellular component	134	1.28e-33
macromolecular complex	Hs	cellular component	134	1.28e-33
histone binding	Hs	molecular function	134	1.28e-33

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	Gene3D	molecular function	1.1E-20