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GENE CARD

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  1. Gene 'KH2012:KH.C5.251'

Gene Card

Best human hits

RRP36

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007122

Gene Model ID

KH2012:KH.C5.251

Location

KhC5:2995406..2997069

Transcript Models and Sequences

  KH2012:KH.C5.251.v1.A.ND4-1
KH2012:KH.C5.251.v1.A.nonSL5-1
KH2012:KH.C5.251.v1.A.SL1-1
KH2012:KH.C5.251.v1.A.SL2-1
KH2012:KH.C5.251.v1.A.SL3-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000012193
NCBI Reference Sequence XM_002125334.4
Collections

Gateway full ORF

2 results

cien109324

Plate: VES87_M09

cien130456

Plate: VES90_K18

Gene collection 1 (N. Satoh)

2 results

citb7c15

Plate: R1CiGC29p03

cieg049p12

Plate: R1CiGC23h19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
RRP36 PANTHER rRNA biogenesis protein RRP36
RRP36 Pfam rRNA biogenesis protein RRP36

GOSlim

6 results

GO Term Annotation Origin Type
RNA binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
RNA processing Orthology biological process
macromolecular complex Orthology cellular component

GO (Orthology)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Hs biological process
cleavage involved in rRNA processing Hs biological process
RNA binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
rRNA processing Hs biological process
90S preribosome Hs cellular component
ribosome biogenesis Hs biological process
ribosomal small subunit biogenesis Hs biological process

GO (Blast)

5 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA binding Hs molecular function 122 3.55e-33
nucleus Hs cellular component 122 3.55e-33
nucleoplasm Hs cellular component 122 3.55e-33
nucleolus Hs cellular component 122 3.55e-33
90S preribosome Hs cellular component 122 3.55e-33

GO (InterProScan)

1 result

GO Term Analysis Type e-value
cleavage involved in rRNA processing PANTHER biological process 4.8E-52

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