Aniseed - Gene card

Gene 'KH2012:KH.C4.481'

Gene Card

Best human hits

UBAP2; UBAP2L

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006577

Gene Model ID

KH2012:KH.C4.481

Location

KhC4:5041144..5057557

Transcript Models and Sequences

KH2012:KH.C4.481.v1.A.nonSL4-1
KH2012:KH.C4.481.v1.A.nonSL5-1
KH2012:KH.C4.481.v1.A.SL1-1
KH2012:KH.C4.481.v1.A.SL2-1
KH2012:KH.C4.481.v2.A.nonSL4-1
KH2012:KH.C4.481.v2.A.nonSL5-1
KH2012:KH.C4.481.v2.A.SL1-1
KH2012:KH.C4.481.v2.A.SL2-1
KH2012:KH.C4.481.v3.A.SL3-1
KH2012:KH.C4.481.v4.A.SL3-1

External Database Gene Card

External database links

5 results

Database	Gene ID
NCBI Reference Sequence	XM_002129015.2
NCBI Reference Sequence	XM_009860088.2
NCBI Reference Sequence	XM_018811532.1
NCBI Reference Sequence	XM_018811533.1
NCBI Reference Sequence	XM_018811534.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

citb085d19

Plate: R1CiGC46h09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
UBA-like_sf	SUPERFAMILY	UBA-like superfamily
DUF3697_Uba2	Pfam	Protein of unknown function DUF3697, ubiquitin-associated protein 2

GOSlim

11 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
positive regulation of gene expression	Orthology	biological process
nucleoplasm part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
sexual reproduction	Orthology	biological process
cellular process	Orthology	biological process
nuclear part	Orthology	cellular component
cell adhesion molecule binding	Orthology	molecular function

GO (Orthology)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
Ada2/Gcn5/Ada3 transcription activator complex	Hs	cellular component
cytoplasm	Hs	cellular component
binding of sperm to zona pellucida	Hs	biological process
positive regulation of gene expression	Hs	biological process
PcG protein complex	Hs	cellular component
cadherin binding	Hs	molecular function
hematopoietic stem cell homeostasis	Hs	biological process

GO (Blast)

7 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	99.0	1.03e-20
protein binding	Hs	molecular function	99.0	1.03e-20
nucleus	Hs	cellular component	95.1	1.72e-19
Ada2/Gcn5/Ada3 transcription activator complex	Hs	cellular component	99.0	1.03e-20
cytoplasm	Hs	cellular component	99.0	1.03e-20
PcG protein complex	Hs	cellular component	99.0	1.03e-20
cadherin binding	Hs	molecular function	95.1	1.72e-19

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	SUPERFAMILY	molecular function	6.91E-16